GEO help: Mouse over screen elements for information.
Status
Public on Sep 29, 2005
Title
GE Healthcare/Amersham Biosciences CodeLink™ Mouse Whole Genome Bioarray
Technology type
spotted oligonucleotide
Distribution
commercial
Organism
Mus musculus Manufacturer
GE Healthcare
Manufacture protocol
http://www4.amershambiosciences.com/aptrix/upp01077.nsf/Content/codelink_user_protocols Catalog number
300033
Support
glass
Coating
other
Description
Mice exhibit high similarity to many human biological pathways, making it a key model system for human physiological and toxicological studies in drug discovery applications. The probe sequences, representing well annotated, full length and partial mouse gene sequences, were designed based on sequences selected from the NCBI UniGene build #139, RefSeq database (April 1, 2004 release) and dbEST database (July 31, 2004 release).Well-annotated mRNA or coding sequences were chosen to ensure usefulness for a large range of applications in basic research, biotechnology, and drug development. Each sequence was carefully screened to ensure high-quality, specific probe design, and to reduce redundancy of gene targets. All of the probes designed to these sequences were functionally tested, and over 97% were functionally validated against 14 mouse tissues to ensure best representation of the gene and biologically relevant results.
Web link
http://www4.amershambiosciences.com/aptrix/upp01077.nsf/Content/codelink_uniset_mouse1_bioarray Submission date
Sep 26, 2005
Last update date
Mar 25, 2013
Contact name
Randall Lockner
E-mail(s)
randall.lockner@ge.com Phone
480-722-2311
Fax
480-722-2334
URL
http://www.codelinkbioarrays.com Organization name
GE Healthcare Life Sciences
Department
Bioinformatics
Street address
7700 S River Parkway
City
Tempe
State/province
AZ
ZIP/Postal code
85284
Country
USA
Samples (676)
GSM83090 , GSM83100 , GSM83101 , GSM83102 , GSM83103 , GSM83104
GSM83105 ,
GSM83106 ,
GSM83107 ,
GSM83108 ,
GSM96290 ,
GSM96291 ,
GSM96292 ,
GSM96293 ,
GSM96294 ,
GSM96295 ,
GSM96296 ,
GSM96297 ,
GSM96298 ,
GSM96299 ,
GSM96300 ,
GSM116209 ,
GSM116210 ,
GSM116211 ,
GSM116212 ,
GSM116213 ,
GSM116214 ,
GSM116215 ,
GSM116216 ,
GSM116217 ,
GSM116218 ,
GSM116219 ,
GSM116220 ,
GSM116221 ,
GSM116222 ,
GSM116223 ,
GSM116224 ,
GSM116225 ,
GSM116226 ,
GSM116227 ,
GSM116228 ,
GSM116229 ,
GSM116230 ,
GSM116231 ,
GSM116232 ,
GSM116233 ,
GSM116234 ,
GSM116235 ,
GSM116236 ,
GSM116237 ,
GSM116238 ,
GSM116239 ,
GSM116240 ,
GSM116241 ,
GSM116242 ,
GSM116243 ,
GSM116244 ,
GSM116245 ,
GSM116246 ,
GSM116247 ,
GSM116248 ,
GSM116249 ,
GSM116250 ,
GSM116251 ,
GSM116252 ,
GSM116253 ,
GSM116254 ,
GSM116255 ,
GSM116256 ,
GSM116257 ,
GSM116258 ,
GSM116259 ,
GSM116260 ,
GSM116261 ,
GSM116262 ,
GSM116263 ,
GSM116264 ,
GSM116265 ,
GSM116266 ,
GSM116267 ,
GSM116268 ,
GSM116269 ,
GSM116270 ,
GSM116271 ,
GSM116272 ,
GSM116273 ,
GSM116274 ,
GSM116275 ,
GSM116276 ,
GSM116277 ,
GSM116278 ,
GSM116279 ,
GSM116280 ,
GSM116281 ,
GSM116282 ,
GSM116283 ,
GSM116284 ,
GSM116285 ,
GSM116286 ,
GSM116287 ,
GSM116288 ,
GSM116289 ,
GSM116290 ,
GSM116291 ,
GSM116752 ,
GSM116753 ,
GSM116754 ,
GSM116755 ,
GSM116756 ,
GSM116757 ,
GSM116758 ,
GSM116759 ,
GSM116760 ,
GSM116761 ,
GSM116762 ,
GSM116763 ,
GSM116764 ,
GSM116765 ,
GSM121658 ,
GSM121659 ,
GSM142097 ,
GSM142098 ,
GSM142099 ,
GSM142100 ,
GSM142101 ,
GSM142102 ,
GSM149667 ,
GSM153970 ,
GSM153977 ,
GSM153979 ,
GSM153981 ,
GSM153982 ,
GSM155282 ,
GSM155283 ,
GSM155284 ,
GSM155285 ,
GSM155286 ,
GSM155287 ,
GSM155288 ,
GSM155289 ,
GSM155290 ,
GSM155291 ,
GSM155292 ,
GSM155293 ,
GSM155397 ,
GSM155398 ,
GSM155399 ,
GSM155400 ,
GSM155401 ,
GSM155402 ,
GSM155403 ,
GSM155404 ,
GSM155405 ,
GSM155406 ,
GSM155407 ,
GSM155408 ,
GSM155410 ,
GSM155411 ,
GSM155412 ,
GSM155413 ,
GSM155414 ,
GSM155415 ,
GSM155416 ,
GSM155417 ,
GSM155418 ,
GSM155419 ,
GSM155420 ,
GSM155421 ,
GSM157689 ,
GSM157690 ,
GSM157691 ,
GSM157692 ,
GSM157693 ,
GSM157694 ,
GSM157695 ,
GSM157696 ,
GSM157697 ,
GSM157698 ,
GSM157699 ,
GSM157700 ,
GSM157701 ,
GSM157702 ,
GSM157703 ,
GSM157704 ,
GSM157705 ,
GSM157706 ,
GSM157707 ,
GSM157708 ,
GSM157709 ,
GSM157710 ,
GSM157711 ,
GSM157712 ,
GSM157713 ,
GSM157714 ,
GSM157715 ,
GSM157716 ,
GSM157717 ,
GSM157718 ,
GSM157719 ,
GSM157720 ,
GSM157721 ,
GSM157722 ,
GSM157723 ,
GSM157724 ,
GSM158696 ,
GSM159307 ,
GSM159308 ,
GSM159309 ,
GSM159310 ,
GSM159311 ,
GSM159313 ,
GSM159317 ,
GSM159320 ,
GSM159323 ,
GSM198683 ,
GSM198684 ,
GSM198685 ,
GSM198686 ,
GSM198687 ,
GSM198688 ,
GSM198689 ,
GSM198690 ,
GSM198691 ,
GSM198692 ,
GSM198693 ,
GSM198694 ,
GSM198695 ,
GSM198696 ,
GSM198697 ,
GSM198698 ,
GSM198699 ,
GSM198700 ,
GSM198701 ,
GSM198702 ,
GSM198703 ,
GSM198704 ,
GSM198705 ,
GSM198706 ,
GSM198707 ,
GSM198708 ,
GSM198709 ,
GSM198710 ,
GSM198711 ,
GSM198712 ,
GSM198713 ,
GSM198714 ,
GSM198715 ,
GSM198716 ,
GSM198717 ,
GSM198718 ,
GSM198719 ,
GSM198720 ,
GSM198721 ,
GSM198722 ,
GSM198723 ,
GSM198724 ,
GSM198725 ,
GSM198726 ,
GSM198727 ,
GSM198728 ,
GSM198729 ,
GSM198730 ,
GSM198731 ,
GSM198732 ,
GSM198733 ,
GSM198734 ,
GSM198735 ,
GSM198736 ,
GSM198737 ,
GSM198738 ,
GSM218357 ,
GSM218358 ,
GSM218359 ,
GSM218360 ,
GSM218361 ,
GSM218362 ,
GSM218363 ,
GSM218364 ,
GSM260538 ,
GSM260539 ,
GSM260540 ,
GSM260544 ,
GSM260545 ,
GSM260546 ,
GSM285913 ,
GSM285914 ,
GSM285915 ,
GSM285916 ,
GSM285917 ,
GSM285918 ,
GSM285919 ,
GSM285920 ,
GSM285921 ,
GSM285922 ,
GSM285923 ,
GSM285924 ,
GSM285925 ,
GSM285926 ,
GSM285927 ,
GSM285928 ,
GSM285929 ,
GSM285930 ,
GSM285931 ,
GSM285932 ,
GSM285933 ,
GSM285934 ,
GSM285935 ,
GSM297497 ,
GSM297498 ,
GSM297499 ,
GSM297500 ,
GSM297501 ,
GSM297502 ,
GSM297503 ,
GSM297504 ,
GSM297505 ,
GSM297506 ,
GSM297507 ,
GSM297508 ,
GSM298047 ,
GSM298048 ,
GSM298049 ,
GSM298050 ,
GSM298051 ,
GSM298052 ,
GSM298265 ,
GSM298268 ,
GSM298270 ,
GSM298271 ,
GSM298272 ,
GSM298273 ,
GSM298274 ,
GSM298275 ,
GSM312098 ,
GSM312099 ,
GSM312100 ,
GSM312101 ,
GSM312102 ,
GSM312103 ,
GSM312104 ,
GSM312105 ,
GSM312106 ,
GSM312107 ,
GSM312108 ,
GSM312109 ,
GSM312110 ,
GSM312111 ,
GSM312112 ,
GSM312113 ,
GSM312114 ,
GSM312115 ,
GSM312116 ,
GSM312117 ,
GSM312118 ,
GSM312119 ,
GSM312120 ,
GSM312121 ,
GSM312122 ,
GSM312123 ,
GSM312124 ,
GSM312125 ,
GSM312126 ,
GSM312127 ,
GSM350986 ,
GSM350987 ,
GSM350988 ,
GSM350989 ,
GSM350990 ,
GSM350991 ,
GSM361858 ,
GSM361859 ,
GSM365253 ,
GSM365254 ,
GSM365255 ,
GSM365256 ,
GSM372368 ,
GSM372369 ,
GSM372370 ,
GSM372371 ,
GSM372372 ,
GSM372373 ,
GSM372374 ,
GSM372375 ,
GSM372376 ,
GSM372377 ,
GSM372378 ,
GSM372379 ,
GSM396663 ,
GSM396737 ,
GSM396738 ,
GSM396741 ,
GSM396814 ,
GSM396815 ,
GSM418263 ,
GSM418264 ,
GSM418265 ,
GSM418266 ,
GSM418267 ,
GSM418268 ,
GSM418269 ,
GSM418270 ,
GSM418271 ,
GSM418272 ,
GSM418273 ,
GSM418274 ,
GSM422311 ,
GSM422312 ,
GSM422313 ,
GSM422314 ,
GSM461340 ,
GSM461341 ,
GSM461342 ,
GSM461343 ,
GSM461344 ,
GSM461345 ,
GSM506129 ,
GSM506130 ,
GSM506131 ,
GSM506132 ,
GSM506133 ,
GSM506134 ,
GSM506135 ,
GSM506136 ,
GSM506137 ,
GSM506138 ,
GSM506139 ,
GSM506140 ,
GSM579209 ,
GSM579210 ,
GSM579211 ,
GSM579212 ,
GSM579213 ,
GSM579214 ,
GSM579215 ,
GSM579216 ,
GSM579217 ,
GSM579218 ,
GSM579219 ,
GSM579220 ,
GSM579221 ,
GSM579222 ,
GSM579223 ,
GSM579224 ,
GSM579225 ,
GSM579226 ,
GSM579227 ,
GSM579228 ,
GSM579229 ,
GSM579230 ,
GSM579231 ,
GSM579232 ,
GSM579233 ,
GSM579234 ,
GSM579235 ,
GSM579236 ,
GSM579237 ,
GSM579238 ,
GSM579239 ,
GSM579240 ,
GSM579241 ,
GSM579242 ,
GSM579243 ,
GSM579244 ,
GSM579245 ,
GSM579246 ,
GSM579247 ,
GSM579248 ,
GSM579249 ,
GSM579250 ,
GSM579251 ,
GSM579252 ,
GSM579253 ,
GSM579254 ,
GSM579255 ,
GSM579256 ,
GSM579257 ,
GSM579258 ,
GSM579259 ,
GSM579260 ,
GSM579261 ,
GSM579262 ,
GSM579263 ,
GSM579264 ,
GSM579265 ,
GSM579266 ,
GSM579267 ,
GSM579268 ,
GSM579269 ,
GSM579270 ,
GSM579271 ,
GSM579272 ,
GSM579273 ,
GSM579274 ,
GSM579275 ,
GSM579276 ,
GSM579277 ,
GSM579278 ,
GSM579279 ,
GSM579280 ,
GSM579281 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (37)
GSE3603 Microarray analysis of in vivo inhibition of mir-122 with an antisense oligonucleotide.
GSE4221 Wildtype Mouse Hypothalamus Cerebellum Fed Fast
GSE5331 Radiation-induced genes expressed in two murine tumors.
GSE5358 p400/mDomino-deficient mouse embryo proper
GSE6113 Kidney Expression Profiles MT
GSE6643 Effect of forced uncoupling protein-1 expression on 3T3-L1 adipocyte gene expression
GSE7006 Comparison of infrarenal and suprarenal sections of mouse ApoE-/- abdominal aorta
GSE8806 Pioglitazone treatment of Lethal Yellow mice
GSE10312 Impact of Developmental Lead Exposure on Splenic Factors
GSE11321 Gene Expression Differences in p53-Deficient Day 8.5 Mouse Embryos
GSE11547 Hyperthermia and p53 effects on global gene expressions
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.
GSE11719 Comparison of gene expression induced in hearts excised from mice 24 or 48 hours after DMA or DMSO (vehicle) treatment.
GSE11756 Comparison of primary MEF vs HRasV12 + Twist transformed MEF
GSE11785 Control of gene expression by Ott1/RBM15 protein
GSE12425 Dox-regulated Notch4 overexpression in mouse ES cells redirects hemagioblasts to a cardiac fate.
GSE13935 Gene expression in pylorus stomach tissue in Bapx1 (Nkx3.2) deficient mice
GSE14624 Neurosphere cultures transfected with nonsense & miRNA-335 knockout reagents
GSE14937 Altered ovarian gene expression in the lethal yellow mouse
GSE15362 Radiation-induced genes expressed in six murine tumors.
GSE15815 Src kinase Induces Tumor Formation in the cSRC C57BL/6 Mouse
GSE16699 Sip1 regulates sequential fate decisions through feedback signalling from postmitotic neurons to progenitor cells.
GSE16847 Whole mouse genome expression analysis of host responses in Citrobacter rodentium infection
GSE18519 Analysis of gene expression profiles in primary embryonic fibroblasts deficient for the Ing1 locus
GSE20172 Transgenic mice carrying the human PLN gene
GSE23628 Sleep Deprivation and Recovery Sleep for 7 Regions of Mouse Brain.
GSE23752 Induced overexpression of Pdx1 and Ngn3 in a mouse ES cell-derived endoderm population induces pancreatic differentiation
GSE25403 Genome-wide gene expression analysis in mouse embryonic stem cells
GSE25974 Gene expression-based analysis of neural tube closure for the posterior neuropore of Fkbp8 embryos at E9.5
GSE25975 Gene expression-based analysis of neural tube closure for the posterior neuropore of Splotch embryos at E9.5
GSE25983 Gene expression-based analysis of neural tube closure for the posterior neuropore
GSE27277 Effect of Pro- and anti-inflammatory lipids in intracellular survival and killing of mycobacteria
GSE29444 Global gene expression of chemical carcinogen (N-methyl-N-nitrosourea), Helicobacter pylori infection, and high-salt diet-treated mouse gastric mucosa
GSE33968 Gene expression analysis of hemizygous or heterozygous KIT exon 11 deletions NIH3T3 infected cells
GSE34896 Muscle specific proteasome deficient mice
GSE86093 Cxcl1 antagonist on UVB-induced skin inflammation leading to inhibitory effects on photo-skin tumorigensis in Xeroderma pigmentosum type A deficient mice
GSE100104 Myocardial gene expression in mice with cardiac-restricted knockout of COP9 signalosome subunit 8 (CSN8)
Relations Affiliated with
GPL16865
Data table header descriptions ID LOGICAL_ROW The logical row position of the spot.
LOGICAL_COL The logical column position of the spot.
PROBE_NAME The unique probe identifier. Each Probe Name is specific for a given oligonucleotide probe and is the primary identifier.
PROBE_TYPE A classifier indicating the functional role of the oligonucleotide probe.
PUB_PROBE_TARGETS A classifier describing the oligonucleotide probe to target relationship. SINGLE - the oligo uniquely targets a single transcript in the public domain. MULTIPLE - the oligo targets more than one transcript in the public domain. DUPLICATE - more than one oligo exists on the bioarray that target the same transcript.
SPOT_ID An identifier for oligonucleotide probes that do not have a corresponding public reference.
GB_LIST NCBI GenBank accession numbers. Multiple accessions are listed for probes having more than one target transcript (the first accession in the list is the primary accession assigned to the target sequence)
GI_LIST NCBI GenBank GI numbers. Multiple GI numbers are listed for probes having more than one target transcript (the first GI number in the list is the primary GI assigned to the target sequence)
Data table ID LOGICAL_ROW LOGICAL_COL PROBE_NAME PROBE_TYPE PUB_PROBE_TARGETS SPOT_ID GB_LIST GI_LIST 1001
1
1
GE200017
FIDUCIAL
CONTROL
-- FID CTRL: PCTRL17
1002
1
2
GE1488331
DISCOVERY
SINGLE
NM_207255.1 46402262 1003
1
3
GE1461340
DISCOVERY
SINGLE
-- NP DISC: CODELINK UNIQUE
1004
1
4
GE1415502
DISCOVERY
SINGLE
AK080548.1 26099320 1005
1
5
GE1560236
DISCOVERY
SINGLE
BM115361.1 17078379 1006
1
6
GE1557210
DISCOVERY
SINGLE
AK015221.1 12853475 1007
1
7
GE200017
FIDUCIAL
CONTROL
-- FID CTRL: PCTRL17
1008
1
8
GE200018
FIDUCIAL
CONTROL
-- FID CTRL: PCTRL18
1009
1
9
GE1406184
MASK
SINGLE
-- MASK
1010
1
10
GE1409715
DISCOVERY
SINGLE
BX636603.1 33616478 1011
1
11
GE1417824
MASK
SINGLE
-- MASK
1012
1
12
GE1572262
DISCOVERY
SINGLE
AK047664.1 26092339 1013
1
13
GE1537512
DISCOVERY
SINGLE
CA879667.1 27331216 1014
1
14
GE200018
FIDUCIAL
CONTROL
-- FID CTRL: PCTRL18
1015
1
15
GE200019
FIDUCIAL
CONTROL
-- FID CTRL: PCTRL19
1016
1
16
GE1446262
MASK
SINGLE
-- MASK
1017
1
17
GE1388074
DISCOVERY
SINGLE
BF160755.1 11040862 1018
1
18
GE1425706
DISCOVERY
SINGLE
BC041149.1 27370741 1019
1
19
GE1514303
DISCOVERY
SINGLE
AA822155.1 2892023 1020
1
20
GE1575536
DISCOVERY
SINGLE
BC048760.1 28908263
45920 2656 Kbytes .Supplementary data files not provided
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