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Sample GSM116754 Query DataSets for GSM116754
Status Public on Mar 20, 2009
Title SCC induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 30Gy (g_nrs1_30_1d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1day after gamma irradiation at 30Gy
Data processing global median normalization
 
Submission date Jun 28, 2006
Last update date Mar 20, 2009
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE5331 Radiation-induced genes expressed in two murine tumors.

Data table header descriptions
ID_REF
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag; G = Good signal (SNR >= 1)
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 10607.4521 70.5533 G 113.0414 10687.4521 5577.0000 10643.8525 214 16.506763458252 94.5445737621759 79.5246 80.0000 9.6964 189 70.5533
1002 2837.9802 18.8762 G 30.9592 2916.9802 3550.0000 1618.0388 154 14.0028171539307 94.2200727730915 79.0806 79.0000 10.1467 192 18.8762
1003 33.3558 0.2219 G 1.2210 108.3558 107.0000 14.8408 106 11.617374420166 88.7434125431926 75.5126 75.0000 9.1623 123 0.2219
1004 91.3874 0.6078 G 1.8958 166.3874 168.0000 31.7513 113 11.9948348999023 87.767854871251 74.1345 75.0000 8.5119 123 0.6078
1005 631.2828 4.1988 G 7.8487 708.2828 813.0000 304.4408 101 11.3400707244873 90.2424846318363 77.0165 77.0000 8.8283 188 4.1988
1006 14.4200 0.0959 G 1.0088 91.4200 91.0000 9.9882 50 7.97884559631348 90.6262227191842 77.3370 77.0000 9.0842 187 0.0959
1007 11203.2246 74.5160 G 115.7927 11284.2246 6783.0000 10690.7471 213 16.4681510925293 97.4519438457021 80.5433 81.0000 10.9680 216 74.5160
1008 10314.1016 68.6021 G 111.2073 10393.1016 3837.0000 10863.4961 211 16.3906536102295 93.4569905419573 78.7289 79.0000 9.6380 233 68.6021
1010 947.5248 6.3023 G 11.1301 1024.5248 1223.0000 522.7839 143 13.4934520721436 92.0501593517112 77.9000 77.0000 10.0334 104 6.3023
1012 910.9515 6.0590 G 10.9170 988.9515 1173.0000 494.7721 105 11.562445640564 90.5885190916782 78.5801 78.0000 8.3923 187 6.0590
1013 35.5278 0.2363 G 1.2270 112.5278 113.0000 13.8011 72 9.57461452484131 91.7078457379111 77.7278 77.0000 9.8052 186 0.2363
1014 10500.5176 69.8420 G 112.3829 10580.5176 5639.0000 10491.2139 199 15.9177465438843 94.1470319620444 79.7064 80.0000 9.4314 226 69.8420
1015 10438.2695 69.4280 G 113.9263 10518.2695 4801.0000 10874.1758 208 16.2737159729004 92.3252405166354 79.3113 80.0000 8.2168 220 69.4280
1017 32.2133 0.2143 G 1.2054 109.2133 111.0000 14.8255 75 9.77204990386963 90.6055200515933 76.5275 77.0000 9.0703 188 0.2143
1018 50.9592 0.3389 G 1.4400 125.9592 127.0000 17.6727 100 11.2837915420532 87.4703043482076 74.4583 75.0000 8.3135 124 0.3389
1019 552.6563 3.6759 G 6.9964 629.6563 737.0000 279.5541 96 11.0558128356934 89.9975160264547 77.1484 77.0000 8.6650 188 3.6759
1020 14.2857 0.0950 G 1.0025 91.2857 93.0000 11.3374 42 7.3127326965332 91.0568934305292 77.1209 77.0000 9.3713 188 0.0950
1021 10802.3096 71.8493 G 115.1339 10881.3096 5322.0000 10766.8164 199 15.9177465438843 94.5100002074106 79.9736 79.0000 10.3400 235 71.8493
1022 12815.2549 85.2380 G 90.1629 12912.2549 12364.0000 10642.7539 163 14.4061803817749 143.21025934194 106.5658 97.0000 30.8068 236 85.2380
1024 4.0000 L 0.8993 82.0000 84.0000 13.2368 33 6.48204469680786 91.1786544138246 78.5060 78.0000 8.7858 172 0.0266

Total number of rows: 36227

Table truncated, full table size 4572 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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