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Sample GSM198714 Query DataSets for GSM198714
Status Public on Jun 09, 2008
Title SCC induced spontaneously in C3H/He mouse, 6 hours after gamma irradiation at 30 Gy (g_scc7_30_6h_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 6 hours after gamma irradiation at 30 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7507.7983 65.0730 G 76.8992 7587.7983 4414.0000 7586.4565 111 11.8882122039795 98.6719469076243 78.5385 80.0000 12.4480 188 65.0730
1002 1 1714.4819 14.8601 G 18.7522 1791.4819 2120.0000 1005.9414 83 10.2800235748291 95.5345368262926 77.8462 77.0000 12.3564 188 14.8601
1003 1 31.5873 0.2738 G 1.1591 108.5873 107.0000 15.4166 63 8.95623207092285 93.6829830740525 77.0726 77.0000 11.1220 185 0.2738
1004 1 91.5085 0.7931 G 1.7747 167.5085 166.0000 27.5259 59 8.66724491119385 94.3884718887288 75.9451 76.0000 12.2590 188 0.7931
1005 1 17.8696 0.1549 L 0.9960 94.8696 97.0000 16.3117 46 7.65303993225098 95.2467006638706 76.6099 77.0000 12.1645 188 0.1549
1006 1 12.4844 0.1082 L 0.9717 86.4844 87.0000 12.7549 64 9.02703380584717 89.0050251256281 75.4659 74.0000 10.0034 90 0.1082
1007 1 6875.1851 59.5899 G 74.7121 6952.1851 2572.0000 7539.2139 121 12.4121704101563 93.0529467448612 77.1319 77.0000 10.7020 188 59.5899
1008 1 7506.6274 65.0629 G 77.9241 7585.6274 4510.0000 7449.8154 104 11.5072546005249 97.3463558831166 78.8571 79.0000 12.2309 188 65.0629
1010 1 948.5181 8.2212 G 10.6368 1026.5181 1188.0000 558.7799 83 10.2800235748291 96.5060198014547 77.5099 78.0000 12.3373 157 8.2212
1012 1 845.6539 7.3296 G 9.4630 924.6539 1092.0000 514.0077 78 9.96557521820068 97.7125675712583 79.7912 79.0000 12.4750 188 7.3296
1013 1 56.5152 0.4898 G 1.4155 133.5152 132.0000 24.8061 66 9.16699600219727 94.323259834029 78.3022 77.0000 11.5488 188 0.4898
1014 1 7752.4287 67.1933 G 82.3886 7830.4287 4864.0000 7429.1064 107 11.6720447540283 95.0426640505818 78.7473 78.0000 11.3618 188 67.1933
1015 1 7494.8320 64.9606 G 78.0113 7573.8320 4408.0000 7709.1172 115 12.1005182266235 97.0863561574385 79.0714 79.0000 12.0576 188 64.9606
1017 1 38.1569 0.3307 G 1.2163 117.1569 115.0000 18.5381 51 8.0582389831543 96.3212992349244 77.4333 79.0000 11.5475 186 0.3307
1018 1 49.6379 0.4302 G 1.3386 125.6379 125.0000 23.1187 58 8.59348011016846 93.8574072357293 77.9810 76.0000 11.9049 164 0.4302
1019 1 150.9155 1.3080 G 2.4345 227.9155 235.0000 70.3682 71 9.50789165496826 93.6191461400669 78.4506 77.0000 11.0794 168 1.3080
1020 1 8.9677 0.0777 L 0.8754 85.9677 87.0000 14.1774 31 6.2825493812561 98.1997694486588 79.5934 77.0000 14.1332 188 0.0777
1021 1 7667.0444 66.4533 G 79.4784 7746.0444 4503.0000 7688.3672 115 12.1005182266235 97.4609435618238 78.6835 79.0000 12.3073 164 66.4533
1022 1 7254.8740 62.8808 G 73.0238 7334.8740 4287.0000 7343.7124 105 11.562445640564 100.444920957592 79.9074 80.0000 13.6299 168 62.8808
1024 1 19.0256 0.1649 G 1.0129 97.0256 98.0000 17.7814 39 7.04672574996948 95.7885884121605 78.2967 78.0000 11.8591 188 0.1649

Total number of rows: 36227

Table truncated, full table size 4684 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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