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Sample GSM83106 Query DataSets for GSM83106
Status Public on Mar 01, 2006
Title ASO T00278949
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics Male C57Bl/6 Mice were 10.5 weeks old at time of sacrifice.
Treatment protocol Male C57Bl/6 mice injected i.p. 2x/week for 4 weeks with 50mg/kg miR-122 ASO, sacrificed 2 days after last dose.
Extracted molecule total RNA
Extraction protocol For RNA isolation, liver was homogenized in RNeasy RLT buffer using Polytron homogenizer, layered onto 5.7M CsCl2 and pelleted after overnight centrifugation at 35000 rpm, room temp. The pellet was resuspended in RLT buffer and RNA was isolated on RNeasy midi columns following the manufacturer's instructions, and including an on-column DNase digestion step.
Label biotin
Label protocol CodeLink Expression Assay protocol
 
Hybridization protocol CodeLink Expression Assay protocol
Scan protocol CodeLink Expression Assay protocol
Description mir-122 antisense used is a 2'-O-methoxyethyl phosphorothioate modified antisense RNA oligonucleotide with sequence 5'-ACAAACACCAUUGUCACACUCCA-3'
Data processing CodeLink Expression Analysis 4.1.0.29054
 
Submission date Nov 11, 2005
Last update date Nov 14, 2005
Contact name Michael Pear
E-mail(s) mpear@isisph.com
Phone 760-603-2779
URL http://www.isspharm.com
Organization name Isis Pharmaceuticals, Inc.
Department Research Informatics
Street address 1896 Rutherford Rd
City Carlsbad
State/province CA
ZIP/Postal code 92009
Country USA
 
Platform ID GPL2897
Series (1)
GSE3603 Microarray analysis of in vivo inhibition of mir-122 with an antisense oligonucleotide.

Data table header descriptions
ID_REF
VALUE Intensity normalized by median of spot-based raw intensity
RAW_INTENSITY Raw signal intensities corrected for background
QUALITY Numerical Quality score from codes G,S (Good, Saturated) =>1, L (near background) => .5, I, C, CI, CL (Ireggular, Background Contaminated) => 0

Data table
ID_REF VALUE RAW_INTENSITY QUALITY
1001 151.1968452 2927.802002
1002 3.451113254 66.82795715 1
1003 0.400983255 7.764709473 0.5
1004 1.182875307 22.90540314 1
1005 0.993840277 19.24489594 1
1006 0.530374875 10.2702713 0.5
1007 125.3263917 2426.842041
1008 136.7642848 2648.327393
1010 1.053328059 20.3968277 1
1012 1.067846394 20.67796326 1
1013 0.872745805 16.90000153 1
1014 103.3872679 2002.009033
1015 139.4460126 2700.256836
1017 0.211177963 4.089286804 0.5
1018 0.621545399 12.0357132 1
1019 0.18971546 3.673683167 0.5
1020 0.399807179 7.74193573 0.5
1021 175.9605311 3407.330322
1022 174.9257795 3387.293213
1024 0.145242447 2.8125 0.5

Total number of rows: 36227

Table truncated, full table size 1151 Kbytes.




Supplementary data files not provided

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