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Status
Public on Nov 17, 2004
Title
Agilent-012391 Whole Human Genome Oligo Microarray G4112A (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4112A
Description
This single 44K formatted microarray represents a compiled view of the human genome as it is understood today. The sequence information used to design this product was derived from a broad survey of well known sources such as RefSeq, Goldenpath, Ensembl, Unigene and others. The resulting view of the human genome covers 41K unique genes and transcripts which have been verified and optimized by alignment to the human genome assembly and by Agilent's Empirical Validation process.
Submission date
Nov 17, 2004
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (3292)
GSM36720 , GSM36726 , GSM36727 , GSM36728 , GSM36729 , GSM36730
GSM36731 ,
GSM36732 ,
GSM52897 ,
GSM52898 ,
GSM52899 ,
GSM52900 ,
GSM52901 ,
GSM52902 ,
GSM52903 ,
GSM52904 ,
GSM52905 ,
GSM52906 ,
GSM52907 ,
GSM52908 ,
GSM52909 ,
GSM67793 ,
GSM67794 ,
GSM67795 ,
GSM67796 ,
GSM67797 ,
GSM67798 ,
GSM67799 ,
GSM67800 ,
GSM67801 ,
GSM67802 ,
GSM67803 ,
GSM67804 ,
GSM67805 ,
GSM67806 ,
GSM67807 ,
GSM67808 ,
GSM67809 ,
GSM67810 ,
GSM67811 ,
GSM67812 ,
GSM89144 ,
GSM89145 ,
GSM89146 ,
GSM89147 ,
GSM89148 ,
GSM89149 ,
GSM89150 ,
GSM89151 ,
GSM89152 ,
GSM89153 ,
GSM89154 ,
GSM89155 ,
GSM94202 ,
GSM94203 ,
GSM94204 ,
GSM94205 ,
GSM94206 ,
GSM94207 ,
GSM94208 ,
GSM94209 ,
GSM102828 ,
GSM102829 ,
GSM102830 ,
GSM102831 ,
GSM102832 ,
GSM102833 ,
GSM102834 ,
GSM102835 ,
GSM102836 ,
GSM102837 ,
GSM102838 ,
GSM102839 ,
GSM102840 ,
GSM102841 ,
GSM102844 ,
GSM102845 ,
GSM102846 ,
GSM102847 ,
GSM102849 ,
GSM102852 ,
GSM106249 ,
GSM106250 ,
GSM106274 ,
GSM106275 ,
GSM106276 ,
GSM106277 ,
GSM106278 ,
GSM106279 ,
GSM106280 ,
GSM106281 ,
GSM106282 ,
GSM106283 ,
GSM106284 ,
GSM106285 ,
GSM107602 ,
GSM107603 ,
GSM107604 ,
GSM107605 ,
GSM107606 ,
GSM107607 ,
GSM107660 ,
GSM107662 ,
GSM107663 ,
GSM107664 ,
GSM108475 ,
GSM108478 ,
GSM108479 ,
GSM108480 ,
GSM108481 ,
GSM108482 ,
GSM108664 ,
GSM108665 ,
GSM108666 ,
GSM108667 ,
GSM108668 ,
GSM108669 ,
GSM108670 ,
GSM108671 ,
GSM108672 ,
GSM108673 ,
GSM108674 ,
GSM108675 ,
GSM108676 ,
GSM108677 ,
GSM108678 ,
GSM108679 ,
GSM108680 ,
GSM108681 ,
GSM108682 ,
GSM108683 ,
GSM108684 ,
GSM108685 ,
GSM108686 ,
GSM108687 ,
GSM108688 ,
GSM108689 ,
GSM108690 ,
GSM108691 ,
GSM108692 ,
GSM108693 ,
GSM108694 ,
GSM108695 ,
GSM108696 ,
GSM108697 ,
GSM108698 ,
GSM108699 ,
GSM108700 ,
GSM108701 ,
GSM108702 ,
GSM108703 ,
GSM108704 ,
GSM108705 ,
GSM108706 ,
GSM108707 ,
GSM108708 ,
GSM108709 ,
GSM108710 ,
GSM108711 ,
GSM108712 ,
GSM108713 ,
GSM108714 ,
GSM108715 ,
GSM108716 ,
GSM108717 ,
GSM108718 ,
GSM108719 ,
GSM108720 ,
GSM108721 ,
GSM108722 ,
GSM108723 ,
GSM108724 ,
GSM108725 ,
GSM108726 ,
GSM108727 ,
GSM108728 ,
GSM108729 ,
GSM108730 ,
GSM108731 ,
GSM108732 ,
GSM108733 ,
GSM108734 ,
GSM108735 ,
GSM108736 ,
GSM108737 ,
GSM108738 ,
GSM108739 ,
GSM108740 ,
GSM108741 ,
GSM108742 ,
GSM108743 ,
GSM108744 ,
GSM108745 ,
GSM108746 ,
GSM108747 ,
GSM108748 ,
GSM108749 ,
GSM108750 ,
GSM108751 ,
GSM108752 ,
GSM108753 ,
GSM108754 ,
GSM108755 ,
GSM108756 ,
GSM108757 ,
GSM108758 ,
GSM108759 ,
GSM108760 ,
GSM108761 ,
GSM108762 ,
GSM108763 ,
GSM108764 ,
GSM108765 ,
GSM108766 ,
GSM108767 ,
GSM108768 ,
GSM108769 ,
GSM108770 ,
GSM108771 ,
GSM108772 ,
GSM108773 ,
GSM108774 ,
GSM108775 ,
GSM108776 ,
GSM108777 ,
GSM108778 ,
GSM108779 ,
GSM108780 ,
GSM108781 ,
GSM108782 ,
GSM108783 ,
GSM108784 ,
GSM108785 ,
GSM108786 ,
GSM108787 ,
GSM108788 ,
GSM108789 ,
GSM108790 ,
GSM108791 ,
GSM108792 ,
GSM108793 ,
GSM108794 ,
GSM108795 ,
GSM109331 ,
GSM109332 ,
GSM109333 ,
GSM109334 ,
GSM109335 ,
GSM109336 ,
GSM110055 ,
GSM110056 ,
GSM110057 ,
GSM110058 ,
GSM110195 ,
GSM110196 ,
GSM110197 ,
GSM110198 ,
GSM110199 ,
GSM110200 ,
GSM113468 ,
GSM113469 ,
GSM113470 ,
GSM113471 ,
GSM113472 ,
GSM113473 ,
GSM113474 ,
GSM113475 ,
GSM113476 ,
GSM113477 ,
GSM113478 ,
GSM113479 ,
GSM113480 ,
GSM113481 ,
GSM113482 ,
GSM113483 ,
GSM113484 ,
GSM113485 ,
GSM113486 ,
GSM113487 ,
GSM113488 ,
GSM113489 ,
GSM113490 ,
GSM113491 ,
GSM113492 ,
GSM113493 ,
GSM113494 ,
GSM113495 ,
GSM113496 ,
GSM113497 ,
GSM113498 ,
GSM113499 ,
GSM113500 ,
GSM113501 ,
GSM113502 ,
GSM113503 ,
GSM113504 ,
GSM113505 ,
GSM113506 ,
GSM113507 ,
GSM113508 ,
GSM113509 ,
GSM113510 ,
GSM113511 ,
GSM113512 ,
GSM113513 ,
GSM113514 ,
GSM113515 ,
GSM113516 ,
GSM113517 ,
GSM113518 ,
GSM113519 ,
GSM113520 ,
GSM113521 ,
GSM113522 ,
GSM113523 ,
GSM113524 ,
GSM113525 ,
GSM113526 ,
GSM113527 ,
GSM113528 ,
GSM113529 ,
GSM113530 ,
GSM113531 ,
GSM113532 ,
GSM113533 ,
GSM113535 ,
GSM113536 ,
GSM113537 ,
GSM113538 ,
GSM113539 ,
GSM113540 ,
GSM113541 ,
GSM113542 ,
GSM113543 ,
GSM113544 ,
GSM113545 ,
GSM113546 ,
GSM113548 ,
GSM113549 ,
GSM113550 ,
GSM113551 ,
GSM113552 ,
GSM113553 ,
GSM113554 ,
GSM113555 ,
GSM113556 ,
GSM113557 ,
GSM113558 ,
GSM113559 ,
GSM113560 ,
GSM113561 ,
GSM113562 ,
GSM113563 ,
GSM113564 ,
GSM113565 ,
GSM113566 ,
GSM113567 ,
GSM113568 ,
GSM113569 ,
GSM113570 ,
GSM113571 ,
GSM113572 ,
GSM113573 ,
GSM113574 ,
GSM113575 ,
GSM113576 ,
GSM113577 ,
GSM113578 ,
GSM113579 ,
GSM113580 ,
GSM113581 ,
GSM113582 ,
GSM113583 ,
GSM113584 ,
GSM113585 ,
GSM113586 ,
GSM113587 ,
GSM113588 ,
GSM113589 ,
GSM113590 ,
GSM113591 ,
GSM113592 ,
GSM113593 ,
GSM113594 ,
GSM113595 ,
GSM113596 ,
GSM113615 ,
GSM113616 ,
GSM113617 ,
GSM113618 ,
GSM113619 ,
GSM113620 ,
GSM113621 ,
GSM113622 ,
GSM113623 ,
GSM113624 ,
GSM113625 ,
GSM113626 ,
GSM113627 ,
GSM113628 ,
GSM113629 ,
GSM113630 ,
GSM113631 ,
GSM113632 ,
GSM113633 ,
GSM113634 ,
GSM113635 ,
GSM113636 ,
GSM113637 ,
GSM113638 ,
GSM113639 ,
GSM113640 ,
GSM113641 ,
GSM113642 ,
GSM113643 ,
GSM113644 ,
GSM113645 ,
GSM113646 ,
GSM113647 ,
GSM113648 ,
GSM113649 ,
GSM113650 ,
GSM113651 ,
GSM113652 ,
GSM113653 ,
GSM113654 ,
GSM113655 ,
GSM113656 ,
GSM113657 ,
GSM113658 ,
GSM113659 ,
GSM113660 ,
GSM113661 ,
GSM113662 ,
GSM113663 ,
GSM113727 ,
GSM113728 ,
GSM113729 ,
GSM113730 ,
GSM113731 ,
GSM113732 ,
GSM113733 ,
GSM113734 ,
GSM113735 ,
GSM113736 ,
GSM113737 ,
GSM113738 ,
GSM113739 ,
GSM113740 ,
GSM113741 ,
GSM113742 ,
GSM113743 ,
GSM113744 ,
GSM113745 ,
GSM113746 ,
GSM113747 ,
GSM113748 ,
GSM113749 ,
GSM113750 ,
GSM113751 ,
GSM113752 ,
GSM113753 ,
GSM113754 ,
GSM113755 ,
GSM113756 ,
GSM113757 ,
GSM113758 ,
GSM113759 ,
GSM113760 ,
GSM113761 ,
GSM113762 ,
GSM113763 ,
GSM113764 ,
GSM113765 ,
GSM113766 ,
GSM113767 ,
GSM113768 ,
GSM113769 ,
GSM113770 ,
GSM113771 ,
GSM113772 ,
GSM113773 ,
GSM113774 ,
GSM113775 ,
GSM113776 ,
GSM113777 ,
GSM113778 ,
GSM113779 ,
GSM113780 ,
GSM113781 ,
GSM113782 ,
GSM113783 ,
GSM113784 ,
GSM113785 ,
GSM113786 ,
GSM113787 ,
GSM113788 ,
GSM113789 ,
GSM113790 ,
GSM113791 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (136)
GSE2035 Hearts_DD_Screening
GSE2740 Estrogen-regulated genes predict survival in estrogen receptor and/or progesterone receptor-positive breast cancers
GSE3155 Gene expression profiling of the 20 human early breast carcinomas by three miaroarray platforms
GSE4117 Effects of laughter on gene expression profiles of patients with type 2 diabetes
GSE4214 Gene expression profiling of the four human tissues by two microarray platforms and TaqMan real-time PCR
GSE4595 Expression profiling of motor cortex in sporadic amyotrophic lateral sclerosis
GSE4707 Microarray Analysis of Differentially Expressed Genes in Placental Tissue of Severe Preeclampsia
GSE4763 Identity of the human cancer cell DNA hypermethylome revealed by gene expression profiling
GSE4809 A Stem Cell-Like Chromatin Pattern May Predispose Tumor Suppressor Genes to DNA Hypermethylation
GSE4823 Comparison of normal breast epithelium and stroma from reduction and I.D.C. cases
GSE4864 Novel mechanisms of galactose toxicity in human galactose-1-phosphate uridyltransferase (GALT)-deficient cells
GSE4901 Effects of laughter on gene expression profiles patients with type 2 diabetes (Tenri)
GSE4906 Comparing control and TGF-beta treated cord blood-derived human mast cells
GSE5176 Microarray Studies in the Laser Capture Microdissected SNc after a Single Administration of MPTP in Common Marmosets
GSE5272 Human airway inflammatory cell response to LPS and house dust mite antigen
GSE5346 Azaspiracid_jurkat_time series experiment
GSE5350 MicroArray Quality Control (MAQC) Project
GSE5546 Prediction of breast cancer prognosis by gene expression profile of TP53 status.
GSE5966 NB4 cells treated with lethal toxin
GSE6427 Gene expression changes in human colorectal cell line HCT116 DICER Exon5 knockout cells
GSE6711 Time course of glucocortiocid receptor isoforms
GSE7190 Three Reactive Compartments in Venous Malformations
GSE7215 Farnesol-induced apoptosis in human lung carcinoma cells is coupled to the endoplasmic reticulum (ER) stress response
GSE7315 autism with dup(15q)
GSE7316 autism with FMR1FM
GSE7317 control males
GSE7329 Gene expression profiles of lymphoblastoid cells
GSE7410 Gene expression in early stage cervical cancer
GSE7413 Molecular Characterization of Human Breast Tumor Microvessels
GSE7423 Down-stream effects in demyelinating neuropathies
GSE7469 Defective cell cycle checkpoint functions in melanoma are associated with altered patterns of gene expression
GSE7512 Allergen-stimulated CD4+ T cells from hen's egg allergic patients
GSE7960 Analysis of MYC- and PIM1-dependent genes
GSE8190 Human airway epithelial cell response to LPS and house dust mite antigen
GSE8347 Comparsion of different hESC line derived neural progenitor cells (hNPCs)
GSE8511 Profiling of prostate tissues in prostate cancer progression
GSE8834 Genome-wide gene expression profile analysis of MCL1 over-expressing B-NHL cells
GSE8845 Azaspiracid exposure to lymphocyte T cells
GSE8873 Islet cells CD40L_vs_ islet cells CTRL
GSE8917 Development of gene expression signatures for practical radiation biodosimetry
GSE9014 Tumor-associated stroma derived from primary clinical breast cancer samples
GSE9170 Five distinct biological processes and 14 differentially expressed genes characterize TEL/AML1-positive leukemia
GSE9578 HCMV virus produced in different cell types induces different transcriptional responses
GSE9637 X-inactivation in hESCs
GSE9709 Human induced pluripotent stem (iPS) cells from neonatal skin derived cells
GSE9815 Microarray Analysis of Differentially Expressed Genes in human bronchial cells(BEAS-2B) treated MTX
GSE10195 Peripheral Blood Cell Gene Expression Profiling in Patients with Coronary Artery Disease (Homo sapiens)
GSE10198 Mycobacterium tuberculosis targets DC-SIGN for immunosuppression through the PD-1/PD-Ligand pathway
GSE10601 Time course gene expression profiling of T-cell (CD40L+) induced, anti-CD40-siRNA treated, HUVECs
GSE10613 Convergence of Mutation and Epigenetic Alterations Identifies Common Target Genes in Breast and Colon Cancer
GSE10621 Prostaglandin E2 Receptor Subtype EP2- and EP4-regulated Gene Expression Profiling in Human Ciliary Smooth Muscle Cells
GSE10704 Human_IPAH_LMM_Arteries
GSE10893 Basal-like Breast Cancer DNA copy number losses identify genes involved in genomic instability, response to therapy, and patient survival
GSE11003 Gene expression profiling distinguishes JAK2V617F-negative from JAK2V617F-positive patients in essential thrombocythemia
GSE11064 AdHBx UV vs AdEasy UV vs HepG2
GSE11108 Study of HepG2 cells transduced with HBX expressing recombinant Adenoviruses (AdHBx) and treated with UV
GSE11223 Colon biopsies from UC patients and healthy controls
GSE11422 Genes differentially expressed upon CHD8 knockdown
GSE11423 Phosphate stimulates parathyroid cell proliferation and PTH release in organ cultures of hyperparathyroidism
GSE11429 In Vitro and In Vivo Analysis of B-Myb in Basal-Like Breast Cancer
GSE11975 Gene Expression in Adipose Tissue during Weight Loss
GSE12154 Stimulation of type I Interferon system by double-stranded RNA in cultured human thyroid follicles
GSE12164 Amiodarone effects on cultured human thyroid follicles
GSE12244 Iodide Inhibits Vascular Endothelial Growth Factor-A Expression in Cultured Human Thyroid Follicles
GSE12391 Melanoma: comparison between common nevi, radial/vertical growth phase melanoma, metastases and dysplastic nevi
GSE12428 Current smoking-specific gene expression signature in bronchial epithelium is enhanced in squamous cell lung cancer
GSE12449 CXCL12 Mediated T-Cell Migration Via Activation of Wnt5A
GSE12472 A COPD-related gene expression signature in squamous cell lung cancer
GSE12622 Tumor-associated stroma derived from primary clinical breast cancer samples (II)
GSE13029 Predicting Outcome in Follicular Lymphoma by Using Interactive Gene Pairs
GSE13673 Transcriptional Regulation of HL60 Neutrophil Differentiation: Promyelocyte trajectory vs. Neutrophil trajectory
GSE14063 CD38 modulates CXCR4 signals in chronic lymphocytic leukemia cells: potential therapeutic implications
GSE14067 Kidney transplantation
GSE14356 Kidney transplantation (Agilent set)
GSE14466 Quiescent keratinocytes and fibroblasts: radiation dose response
GSE15110 H1 hESC Exposed to Butyrate
GSE15112 ESC Exposed to Butyrate
GSE15356 Transcriptional and polysomal profile of poliovirus-infected HUVECs
GSE15363 Heterogeneity of Breast Cancer Vasculature
GSE15739 Il13-stimulation of human paSMCs
GSE15742 Reduced expression of RhoE promotes ROCK-dependent invasion in transformed human fibroblasts
GSE15838 Effect of IL-1 alpha, TNF alpha, or IFN gamma on gene expression levels in thyroid follicles (Euthyroid Graves' Disease)
GSE15862 GW7647 and Rosiglitazone treated human differentiated adipocytes
GSE15956 Dendritic Cells
GSE15966 Gene expression signature predictive of rapid response to imatinib mesylate in Gastrointestinal Stromal Tumor (GIST)
GSE16957 Iodide effect on mRNA expression levels of genes related to immunological function in cultured human thyroid follicles
GSE17011 Characterisation of the NRF2-mediated anti-oxidant gene battery by transcriptional profiling
GSE17596 Expression profiling of human mesoangioblasts indicates that S1P induces differentiation towards smooth muscle cells
GSE18188 Williams-Beuren syndrome: typical deletions versus atypical deletions of the 7q11.23 region
GSE18229 Phenotypic and Molecular Characterization of the Claudin-low Intrinsic Subtype of Breast Cancer
GSE18276 Identification of genes that are regulated by the A and B isoforms of the human progesterone receptor
GSE18372 Effect of Lactobacillus plantarum MB452 on the gene expression of the intestinal epithelial cell line Caco-2
GSE19477 A High-dose of genistein down-regulates TGF-beta pathway genes in human uterine leiomyoma cells
GSE20062 In vivo identification of solar-responsive gene network
GSE20147 Profiling of cutaneous tumors
GSE20191 Retinal pigment epithelium and photoreceptor and choroidal cells
GSE20350 Comparison Between Gene Expression Profiles of Sensitive and Resistant Trabectedin Liposarcoma Cell Lines
GSE20582 Human bronchial cells (BEAS-2B) treated with amiodarone (AM)
GSE20881 Colon biopsies from Crohns patients and healthy controls
GSE21846 Transcriptional profiling of 29 cases of diffuse large B cell lymphoma
GSE21849 Gene and microRNA expression data of diffuse large B cell lymphoma from human diagnostic frozen samples
GSE22226 Heterogeneity of Response to Chemotherapy and Recurrence-free Survival in Neoadjuvant Breast Cancer: Results from the I-SPY 1 TRIAL
GSE23327 Lung biopsies from sensitized or control rhesus macaques
GSE23693 Aberrant silencing of cancer-related genes by CpG hypermethylation occurs independently of their spatial organization in the nucleus
GSE23851 Altered Gene Expression in Human Adipose Stem Cells Cultured with Fetal Bovine Serum Compared to Human Supplements
GSE24151 Molecular profiling of cytomegalovirus-induced human CD8+ T cell differentiation
GSE24204 Identification of truncating mutations in HPCX1 families with NMD technology
GSE24205 HPCX1 linked prostate cancer
GSE24613 MiR-133b targets antiapoptotic genes and enhances death receptor-induced apoptosis
GSE24639 To identify novel metastasis-associated gene candidates in colorectal cancer
GSE25143 Characterization of Stem-cell derived Retinal Pigmented Epithelium (RPE)
GSE25175 PHK Cells: control vs. cyclosporine vs. 11R-VIVIT
GSE25303 HeLa cells: overexpression of importin alpha2
GSE25534 Tuberculosis patients, latent and uninfected controls; whole blood
GSE25830 TTF-1-induced ROR1 is required to sustain EGFR survival signaling in lung adenocarcinoma
GSE26338 Genomic analysis identifies unique signatures predictive of brain, lung, and liver relapse
GSE28000 Differential Gene Expression between African American and European American Colorectal Cancer Patients
GSE29609 Clear-cell renal cell carcinomas tumors
GSE30023 A comparative gene expression profiling of spondyloarthropathy and rheumatoid arthritis using oligonucleotide based microarrays
GSE32877 Gene profile for chemotherapy response in head and neck carcinoma
GSE33438 MCF-7 and ZR-75-1 cell lines hypoxia
GSE33439 Global gene expression analysis reveals a link between NDRG1 and vesicle transport.
GSE34499 Expression profile of maliganant mesothelioma cell lines
GSE35467 IGFBP2 driven glioma progression is prevented by blocking a clinically significant network of integrin, ILK, and NK-kB
GSE36889 Micro-scale genomic copy number aberrations as another means of mutagenesis in breast cancer
GSE37326 HepG2 treated with Polycyclic Aromatic Hydrocarbons (PAHs)
GSE41441 human placenta-derived cell line (JEG-3): Control vs. valproic acid(VPA)-treated
GSE42998 MicroRNA transcriptional regulation in lung cancer
GSE50510 Gene expression data for mock and 5-Aza-CdR treated colorectal cancer (CRC) cell lines SW480, HCT116 and RKO
GSE52727 Hes1 and Glucocorticoid Signaling in Bone Sarcoma Cells
GSE52784 HES1 Is a Master Regulator of Glucocorticoid Receptor-Dependent Gene Expression
GSE68239 Compartment-specific investigation of differential gene expression profiles in lungs with idiopathic pulmonariy fibrosis (IPF)
GSE68744 Extensive re-wiring of epithelial-stromal co-expression networks in breast cancer - ER-positive breast cancer validation dataset
GSE131275 Expression profiling of Normal colonic epilthelial RNA and colorectal cancer cell lines RNA
GSE150979 Pro- and anti-tumorigenic capacity of immunoproteasomes in shaping the tumor microenvironment
GSE156483 Hairy Cell Leukemia Cell Line JOK1 +/- RhoH Reconstitution
Relations Alternative to
GPL6848
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE 1
103
430
BrightCorner
BrightCorner
pos
2
103
428
NegativeControl
NegativeControl
neg
3
103
426
NM_001003689
A_23_P80353
FALSE
NM_001003689
NM_001003689 83746 L3MBTL2
l(3)mbt-like 2 (Drosophila)
Hs.517641
ENST00000216237
THC2264916
ref|NM_001003689|ref|NM_031488|gb|AL136564|ens|ENST00000216237
chr22:39950687-39950746
hs|22q13.2
Homo sapiens l(3)mbt-like 2 (Drosophila) (L3MBTL2), transcript variant 2, mRNA [NM_001003689]
GO:0003714(transcription corepressor activity)|GO:0005634(nucleus)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0008270(zinc ion binding)|GO:0016568(chromatin modification)|GO:0046872(metal ion binding)
CCCGACAAGGCTTCAAGTCCAGAGCTGCCTGTCTCCGTCGAGAACATCAAGCAGGAAACA
4
103
424
NM_005503
A_23_P158231
FALSE
NM_005503
NM_005503 321 APBA2
amyloid beta (A4) precursor protein-binding, family A, member 2 (X11-like)
Hs.525718
ENST00000219865
THC2241506
ref|NM_005503|gb|BC082986|gb|AF029108|ens|ENST00000219865
chr15:27193462-27196566
hs|15q13.1
Homo sapiens amyloid beta (A4) precursor protein-binding, family A, member 2 (X11-like) (APBA2), mRNA [NM_005503]
GO:0005515(protein binding)|GO:0007399(nervous system development)|GO:0015031(protein transport)
CCACAGCCCACGAGAAGATAGTCCAAGCTCTGTCCAACTCGGTCGGAGAGATCCACATGA
5
103
422
NM_004672
A_32_P223017
FALSE
NM_004672
NM_004672 9064 MAP3K6
mitogen-activated protein kinase kinase kinase 6
Hs.194694
ENST00000357582
THC2236536
ref|NM_004672|gb|AB208805|ens|ENST00000357582|ens|ENST00000374036
chr1:27366686-27366347
hs|1p36.11
Homo sapiens mitogen-activated protein kinase kinase kinase 6 (MAP3K6), mRNA [NM_004672]
GO:0000166(nucleotide binding)|GO:0004674(protein serine/threonine kinase activity)|GO:0005524(ATP binding)|GO:0006468(protein amino acid phosphorylation)|GO:0016301(kinase activity)|GO:0016740(transferase activity)
GAATGTGGATTCAGGCACCATCCAAATGCTGTTGAACCATAGCTTCACCCTCCACACTCT
6
103
420
NM_001008727
A_24_P935782
FALSE
NM_001008727
NM_001008727 7675 ZNF121
zinc finger protein 121 (clone ZHC32)
Hs.501537
ENST00000320451
THC2427892
ref|NM_001008727|ens|ENST00000320451|thc|THC2427892
chr19:9538344-9538285
hs|19p13.2
Homo sapiens zinc finger protein 121 (clone ZHC32) (ZNF121), mRNA [NM_001008727]
GO:0003677(DNA binding)|GO:0005622(intracellular)|GO:0005634(nucleus)|GO:0006350(transcription)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0008270(zinc ion binding)|GO:0046872(metal ion binding)
TGTGGAAAATTCTTTAGATATTCTTCATATCTTAATAGTCACATGCGAACCCATACTGGG
7
103
418
Pro25G
Pro25G
pos
8
103
416
NM_020630
A_24_P343695
FALSE
NM_020630
NM_020630 5979 RET
ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease)
Hs.350321
ENST00000340058
THC2310316
ref|NM_020630|gb|BC003072|gb|M16029|gb|L03357
chr10:42937418-42939131
hs|10q11.21
Homo sapiens ret proto-oncogene (multiple endocrine neoplasia and medullary thyroid carcinoma 1, Hirschsprung disease) (RET), transcript variant 4, mRNA [NM_020630]
GO:0000166(nucleotide binding)|GO:0004713(protein-tyrosine kinase activity)|GO:0004872(receptor activity)|GO:0005509(calcium ion binding)|GO:0005524(ATP binding)|GO:0006468(protein amino acid phosphorylation)|GO:0007156(homophilic cell adhesion)|GO:0007165(signal transduction)|GO:0007166(cell surface receptor linked signal transduction)|GO:0007497(posterior midgut development)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016301(kinase activity)|GO:0016740(transferase activity)
TGGATGGCAATTGAATCCCTTTTTGATCATATCTACACCACGCAAAGTGATGTATGGTCT
9
103
414
BX094364
A_32_P109901
FALSE
BX094364 Hs.124584
THC2407425
gb|BX094364|thc|THC2407425
chr18:11643410-11643351
hs|18p11.21
BX094364 Soares_testis_NHT Homo sapiens cDNA clone IMAGp998D074163, mRNA sequence [BX094364]
GTGGTAACATAAAGTTTCAAGTTCAAAGTTTATGTGTCCTTCCTTACTCCCGGTGGAGTG
10
103
412
ENST00000333722
A_32_P158786
FALSE
XM_056680
BC015121 Hs.535190
ENST00000333722
THC2309386
ens|ENST00000333722|gb|BC015121|gb|BC014352|gb|BC039369
chr12:62954959-62950714
hs|12q14.2
Homo sapiens chromosome 12 open reading frame 56, mRNA (cDNA clone IMAGE:3685952). [BC015121]
GO:0005524(ATP binding)|GO:0015986(ATP synthesis coupled proton transport)|GO:0016469(proton-transporting two-sector ATPase complex)|GO:0046933(hydrogen-transporting ATP synthase activity, rotational mechanism)|GO:0046961(hydrogen-transporting ATPase activity, rotational mechanism)
TGTCCTCCCATCATTACTTTTGTGGCCAGTATTGTGAAACAAGTGGTGAGGGGTCTTTCA
11
103
410
E1A_r60_a20
E1A_r60_a20
pos
12
103
408
NM_003927
A_23_P15864
FALSE
NM_003927
NM_003927 8932 MBD2
methyl-CpG binding domain protein 2
Hs.25674
ENST00000256429
THC2234702
ref|NM_003927|gb|BC032638|gb|CR592999|ens|ENST00000256429
chr18:49935450-49935391
hs|18q21.2
Homo sapiens methyl-CpG binding domain protein 2 (MBD2), transcript variant 1, mRNA [NM_003927]
GO:0003677(DNA binding)|GO:0003696(satellite DNA binding)|GO:0005515(protein binding)|GO:0005634(nucleus)|GO:0006350(transcription)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0008327(methyl-CpG binding)|GO:0016481(negative regulation of transcription)|GO:0016564(transcriptional repressor activity)
GACCCTAAGATGAAGCTGAGCTTTTGATGCCAGGTGCAATCTACTGGAAATGTAGCACTT
13
103
406
BC038371
A_32_P171530
FALSE
BC038371 Hs.133421
THC2338508
gb|BC038371|thc|THC2338508
chr5:38593473-38593532
hs|5p13.1
Homo sapiens cDNA clone IMAGE:4829282. [BC038371]
CAAGGCCAACGTGTTTTTTAAAGACCTTTCGATGAAACTCCAAAGCAATTTATAAATTGG
14
103
404
Pro25G
Pro25G
pos
15
103
402
NM_153610
A_24_P925413
FALSE
NM_153610
NM_153610 202333 CMYA5
cardiomyopathy associated 5
Hs.482625
ENST00000238522
THC2311177
ref|NM_153610|ens|ENST00000238522|gb|AF177292|gb|BC063134
chr5:79067786-79067845
hs|5q14.1
Homo sapiens cardiomyopathy associated 5 (CMYA5), mRNA [NM_153610]
GO:0005554(molecular function unknown)|GO:0008372(cellular component unknown)
CCCCATTAGAGCTTAGAGATAGTAATGAAATAGGGAAGACACAAATTACACTTGGATCTA
16
103
400
NM_181645
A_24_P305993
FALSE
NM_181645
NM_181645 159989 CCDC67
coiled-coil domain containing 67
Hs.436625
ENST00000354243
NP404677
ref|NM_181645|ens|ENST00000354243|ens|ENST00000298050|gb|BC017929
chr11:92743969-92744028
hs|11q21
Homo sapiens coiled-coil domain containing 67 (CCDC67), mRNA [NM_181645]
AGAGATGAGTTCATTATTGAAAAACTGAAATCAGCTGTAAATGAGATAGCACTAAGCAGG
17
103
398
NM_032809
A_24_P166931
FALSE
NM_032809
NM_032809 84895 FAM73B
family with sequence similarity 73, member B
Hs.632693
ENST00000358369
THC2246213
ref|NM_032809|gb|BC009114|ens|ENST00000358369|ens|ENST00000349214
chr9:128909700-128910085
hs|9q34.11
Homo sapiens family with sequence similarity 73, member B (FAM73B), mRNA [NM_032809]
GAGGGGTGGTATGCATGAGCTTCTTCGACATCGTGCTGGACTTCATCCTCATGGACGCCT
18
103
396
NM_005656
A_23_P29067
FALSE
NM_005656
NM_005656 7113 TMPRSS2
transmembrane protease, serine 2
Hs.439309
ENST00000332149
THC2253120
ref|NM_005656|gb|AK123948|gb|BC051839|ens|ENST00000332149
chr21:41758833-41758774
hs|21q22.3
Homo sapiens transmembrane protease, serine 2 (TMPRSS2), mRNA [NM_005656]
GO:0004252(serine-type endopeptidase activity)|GO:0005044(scavenger receptor activity)|GO:0005887(integral to plasma membrane)|GO:0006508(proteolysis)|GO:0016020(membrane)
GAAGAAGAGAAAGATGTGTTTTGTTTTGGACTCTCTGTGGTCCCTTCCAATGCTGTGGGT
19
103
394
BE671816
A_32_P58999
FALSE
BE671816 Hs.122337
gb|BE671816
chr15:87544827-87544768
hs|15q26.1
BE671816 7a47d01.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone IMAGE:3221857 3' similar to gb:X12433 PROTEIN PHPS1-2 (HUMAN);, mRNA sequence [BE671816]
ACTGGCTACTGGACAAATTGTATATTACCAGATCATCACTAGCAGCTTTCAGTTGCACTT
20
103
392
NM_015904
A_23_P218608
FALSE
NM_015904
NM_015904 9669 EIF5B
eukaryotic translation initiation factor 5B
Hs.158688
ENST00000289371
NP401649
ref|NM_015904|ens|ENST00000289371|gb|CR613918|gb|CR617158
chr2:99474487-99474546
hs|2q11.2
Homo sapiens eukaryotic translation initiation factor 5B (EIF5B), mRNA [NM_015904]
GO:0000166(nucleotide binding)|GO:0003743(translation initiation factor activity)|GO:0005515(protein binding)|GO:0005525(GTP binding)|GO:0005622(intracellular)|GO:0006412(protein biosynthesis)|GO:0006446(regulation of translational initiation)
GGACACTGATGGACTTAAGTATGGAAGGAAGAAAAATAGGTGTATAAAATGTTTTCCATG
44290 18902 Kbytes .Supplementary file Size Download File type/resource GPL1708_old_annotations.txt.gz
5.8 Mb
(ftp) (http) TXT
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