|
Status |
Public on Jan 10, 2011 |
Title |
LN229_KO_neg_r2 |
Sample type |
RNA |
|
|
Source name |
mock knockdown
|
Organism |
Homo sapiens |
Characteristics |
cell line: LN229 glioma cancer cells
|
Treatment protocol |
Sox2 was knockdown in sw620 cell lines by SiRNA and mock no target conrtol SiRNA
|
Growth protocol |
Cells were cultured in DMEM cell culture media
|
Extracted molecule |
total RNA |
Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
Label |
biotin
|
Label protocol |
start with 250ng total RNA, and Biotinylated cRNA were prepared according to the standard (Applied Biosystems protocol.
|
|
|
Hybridization protocol |
Following fragmentation, 2.0 ug of cRNA were hybridized to hybridized to a 60-mer whole-genome oligonucleotide microarray for 16 hr at 45C and were washed and stained.
|
Scan protocol |
The chips were scanned with 1700 instrument to detect and measure the chemiluminescent and fluorescent signals.
|
Description |
mock knockdown LN229 cells
|
Data processing |
ABI raw intensities were imported into GeneSpring for normalization and data analysis. The ABI Column S_N (signal to noise ratios) was used to filter data. GeneSpring 10.0, is used for automatic normalizing the chip data and analysis the fold change.
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|
|
Submission date |
Aug 26, 2010 |
Last update date |
Jan 10, 2011 |
Contact name |
Biaoyang Lin |
Organization name |
ZheJiang University
|
Department |
ZCNI
|
Lab |
Systems Biology Division
|
Street address |
866 Yu Hang Tang Road Zi Jin Gang Campus Zhejiang University.
|
City |
HangZhou |
ZIP/Postal code |
310058 |
Country |
China |
|
|
Platform ID |
GPL1426 |
Series (2) |
GSE23838 |
Genes regulated by Sox2 in glioma cancer cell line |
GSE23839 |
An integrative analysis of the SOX2 response program in glioblastoma |
|