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Platform GPL981 Query DataSets for GPL981
Status Public on Feb 18, 2004
Title HUMAN_21K_OligoArray_1
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Homo sapiens
 
Description Spotted 70mer oligonucleotide.
The Human Array Ready Oligo Set Version 2 contains arrayable 70mers representing 21,329 well-characterized human genes from the UniGene Database. This database is located at the National Center for Biotechnology Information (see www.ncbi.nlm.nih.gov/UniGene/). All 70mer oligonucleotides in the Human Genome Oligo Set Version 2 were designed after the representative sequences in the UniGene Database, Build Hs 147.
The 70mers have also been Tm normalized to 78°C (±5 C). The Tm normalization allows for a more stringent hybridization at higher temperatures. When a 70-mer could not be designed within the specified Tm range, a shorter or longer length oligo was substituted to maintain the stringent Tm conditions. There are also 12 positive controls and 12 negative controls provided in 16 replicates.
Keywords = spotted
Keywords = 70mer oligonucleotide
 
Contributor(s) Bowman PD, Zhao B
Submission date Feb 10, 2004
Last update date Apr 27, 2006
Contact name Phillip Bowman
E-mail(s) phillip.bowman@cen.amedd.army.mil
Phone 210-916-4297
Organization name Institute of Surgical Research
Street address 3400 Rawley E. Chambers Ave
City San Antonio
State/province TX
ZIP/Postal code 78234-6315
Country USA
 
Samples (22) GSM16784, GSM16814, GSM16815, GSM16816, GSM16817, GSM16818 
Series (1)
GSE1041 Responses of HUVEC to Hypoxia and Reoxygenation

Data table header descriptions
ID
BLOCK Print subarray
ROW Row within subarray
COLUMN Column within subarray
GENE_NAME Descriptive gene name
GB_ACC GenBank accession number
SPOT_ID spot identifier (controls and blanks)

Data table
ID BLOCK ROW COLUMN GENE_NAME GB_ACC SPOT_ID
1 1 1 1 Adrenomedullin NM_001124
2 1 1 2 Transcription factor 15 (basic helix-loop-helix) NM_004609
3 1 1 3 ISL1 transcription factor, LIM/homeodomain, (islet-1) NM_002202
4 1 1 4 Adrenergic, alpha-1D-, receptor NM_000678
5 1 1 5 Lectin, galactoside-binding, soluble, 3 (galectin 3) NM_002306
6 1 1 6 Interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, NM_000882
7 1 1 7 Thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian) NM_003250
8 1 1 8 Formyl peptide receptor 1 NM_002029
9 1 1 9 Opioid receptor, delta 1 NM_000911
10 1 1 10 Distal-less homeo box 2 NM_004405
11 1 1 11 Activating transcription factor 3 NM_004024
12 1 1 12 Afamin NM_001133
13 1 1 13 Apolipoprotein B (including Ag(x) antigen) NM_000384
14 1 1 14 Carboxypeptidase A3 (mast cell) NM_001870
15 1 1 15 Cystatin B (stefin B) NM_000100
16 1 1 16 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 NM_002625
17 1 1 17 Kallikrein B, plasma (Fletcher factor) 1 NM_000892
18 1 1 18 Crystallin, alpha B NM_001885
19 1 1 19 Sex determining region Y NM_003140
20 1 1 20 Thyroid peroxidase NM_000547

Total number of rows: 23232

Table truncated, full table size 1460 Kbytes.






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