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Platform GPL317 Query DataSets for GPL317
Status Public on Apr 15, 2004
Title SHCO
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
 
Description Tip Configuration: Standard 48 tip
Columns per Sector: 30
Rows per Sector: 30
Column Spacing: 146
Row Spacing: 146
 
Submission date May 07, 2003
Last update date Apr 09, 2008
Contact name Jonathan Pollack
E-mail(s) pollack1@stanford.edu
Phone 650-736-1987
Organization name Stanford University
Department Pathology
Lab Pollack Lab
Street address 269 Campus Drive, CCSR3245A
City Stanford
State/province CA
ZIP/Postal code 94305-5176
Country USA
 
Samples (26) GSM6228, GSM6229, GSM6230, GSM6231, GSM6232, GSM6233 
Series (1)
GSE425 Acute myeloid leukemia study

Data table header descriptions
ID unique spot identifier
NAME name of spot
GENE_SYM gene symbol
GENE_NAME gene name, description
UNIGENE NCBI UniGene cluster identifier
CLONE_ID cDNA clone identifier
GB_ACC GenBank accession number
SPOT_ID
PREFERRED_NAME preferred gene name
GENE Entrez GENE ID
SUID Stanford unique identifier
SECTOR spot sector grid coordinate
SECTORROW spot row grid coordinate
SECTORCOL spot column grid coordinate
SOURCE source
PLATEID clone plate identifier
PROW clone plate row
PCOL clone plate column
FAILED did PCR fail, 0 means one distinct band - success
IS_VERIFIED is verified, default no (N)
IS_CONTAMINATED is contaminated, default unknown (U)

Data table
ID NAME GENE_SYM GENE_NAME UNIGENE CLONE_ID GB_ACC SPOT_ID PREFERRED_NAME GENE SUID SECTOR SECTORROW SECTORCOL SOURCE PLATEID PROW PCOL FAILED IS_VERIFIED IS_CONTAMINATED
1 18939 WT1 Wilms tumor 1 1145 IMAGE:503338 AA130187 7490 1 1 1 rgsv;[(384:gf200sv16prt1230_Cd1),(96:gf201sv86b1)] 1 D 1 0 N U 508173
2 18951 UNG2 uracil-DNA glycosylase 2 3041 IMAGE:769600 AA425900 10309 1 1 2 rgsv;[(384:gf200sv16prt1230_Cd13),(96:gf201sv86b7)] 1 D 13 0 N U 508179
3 19034 TIMP3 tissue inhibitor of metalloproteinase 3 (Sorsby fundus dystrophy, pseudoinflammatory) 245188 IMAGE:489519 AA099153 7078 1 1 3 rgsv;[(384:gf200sv16prt1230_Ch1),(96:gf201sv86d1)] 1 H 1 0 N U 508197
4 19046 TEGT testis enhanced gene transcript (BAX inhibitor 1) 74637 IMAGE:884766 AA629591 7009 1 1 4 rgsv;[(384:gf200sv16prt1230_Ch13),(96:gf201sv86d7)] 1 H 13 0 N U 508203
5 19130 SMPD1 sphingomyelin phosphodiesterase 1, acid lysosomal (acid sphingomyelinase) 77813 IMAGE:729964 AA416890 6609 1 1 5 rgsv;[(384:gf200sv16prt1230_Cl1),(96:gf201sv86f1)] 1 L 1 0 N U 508221
6 19142 SLC6A1 solute carrier family 6 (neurotransmitter transporter, GABA), member 1 22003 IMAGE:177967 H46254 6529 1 1 6 rgsv;[(384:gf200sv16prt1230_Cl13),(96:gf201sv86f7)] 1 L 13 0 N U 508227
7 19226 S100A8 S100 calcium binding protein A8 (calgranulin A) 416073 IMAGE:562729 AA086471 6279 1 1 7 rgsv;[(384:gf200sv16prt1230_Cp1),(96:gf201sv86h1)] 1 P 1 0 N U 508245
8 19238 RPL36AL ribosomal protein L36a-like 419465 IMAGE:884842 AA669359 6166 1 1 8 rgsv;[(384:gf200sv16prt1230_Cp13),(96:gf201sv86h7)] 1 P 13 0 N U 508251
9 19682 COPEB core promoter element binding protein 285313 IMAGE:510381 AA055584 CPBP=CBA1=DNA-binding protein 1316 1 1 9 rgsv;[(384:gf201sv89prt1231_Cd1),(96:gf201sv92b1)] 2 D 1 2 N U 508749
10 19694 CX3CL1 chemokine (C-X3-C motif) ligand 1 80420 IMAGE:140574 R66139 CX3C chemokine=orthologue of mouse fractalkine 6376 1 1 10 rgsv;[(384:gf201sv89prt1231_Cd13),(96:gf201sv92b7)] 2 D 13 0 N U 508755
11 19778 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase, type I, alpha 149255 IMAGE:293950 N64014 8394 1 1 11 rgsv;[(384:gf201sv89prt1231_Ch1),(96:gf201sv92d1)] 2 H 1 0 N U 508773
12 19790 PPP1R8 protein phosphatase 1, regulatory (inhibitor) subunit 8 356590 IMAGE:278650 N66208 5511 1 1 12 rgsv;[(384:gf201sv89prt1231_Ch13),(96:gf201sv92d7)] 2 H 13 0 N U 508779
13 19873 STK12 serine/threonine kinase 12 180655 IMAGE:531319 AA071235 9212 1 1 13 rgsv;[(384:gf201sv89prt1231_Cl1),(96:gf201sv92f1)] 2 L 1 2 N U 508797
14 19885 ENPP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 264750 IMAGE:430968 AA678335 5169 1 1 14 rgsv;[(384:gf201sv89prt1231_Cl13),(96:gf201sv92f7)] 2 L 13 0 N U 508803
15 19969 SDHD succinate dehydrogenase complex, subunit D, integral membrane protein 168289 IMAGE:471598 AA035383 6392 1 1 15 rgsv;[(384:gf201sv89prt1231_Cp1),(96:gf201sv92h1)] 2 P 1 2 N U 508821
16 19980 KL klotho 94592 IMAGE:897271 AA677655 9365 1 1 16 rgsv;[(384:gf201sv89prt1231_Cp13),(96:gf201sv92h7)] 2 P 13 2 N U 508827
17 120837 SETBP1 SET binding protein 1 151717 IMAGE:1562231 AA953508 26040 1 1 17 rgsv;[(384:gf201sv97prt1232_Cd1),(96:gf204sv220b1)] 3 D 1 0 N U 521037
18 120848 CCL1 chemokine (C-C motif) ligand 1 72918 IMAGE:1570420 AA931884 6346 1 1 18 rgsv;[(384:gf201sv97prt1232_Cd13),(96:gf204sv220b7)] 3 D 13 0 N U 521043
19 120904 KIAA0241 KIAA0241 protein 150275 IMAGE:1584287 AA971406 23080 1 1 19 rgsv;[(384:gf201sv97prt1232_Ch1),(96:gf204sv220d1)] 3 H 1 0 N U 521061
20 120916 MECP2 methyl CpG binding protein 2 (Rett syndrome) 3239 IMAGE:1587248 AA977094 4204 1 1 20 rgsv;[(384:gf201sv97prt1232_Ch13),(96:gf204sv220d7)] 3 H 13 0 N U 521067

Total number of rows: 43008

Table truncated, full table size 6903 Kbytes.






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