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    SNORA62 small nucleolar RNA, H/ACA box 62 [ Homo sapiens (human) ]

    Gene ID: 6044, updated on 10-Oct-2023

    Summary

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    Official Symbol
    SNORA62provided by HGNC
    Official Full Name
    small nucleolar RNA, H/ACA box 62provided by HGNC
    Primary source
    HGNC:HGNC:10107
    See related
    Ensembl:ENSG00000202363 MIM:180646; AllianceGenome:HGNC:10107
    Gene type
    snoRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    E2; E2-1; RNE2; RNU108
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    Genomic context

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    Location:
    3p22.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (39411054..39411207)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (39423979..39424132)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (39452545..39452698)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377644 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19704 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19705 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19706 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14226 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19707 Neighboring gene solute carrier family 25 member 38 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:39445554-39446346 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:39447932-39448723 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14228 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:39450309-39451100 Neighboring gene uncharacterized LOC107986075 Neighboring gene small nucleolar RNA, H/ACA box 6 Neighboring gene ribosomal protein SA Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14229 Neighboring gene NANOG hESC enhancer GRCh37_chr3:39508789-39509471 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:39513805-39514612 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:39514613-39515420 Neighboring gene myelin associated oligodendrocyte basic protein Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:39547383-39547882

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Three small nucleolar RNAs of unique nucleotide sequences. Ruff EA, et al. Proc Natl Acad Sci U S A, 1993 Jan 15. PMID 8421699, Free PMC Article
    2. Genes for E1, E2, and E3 small nucleolar RNAs. Nag MK, et al. Proc Natl Acad Sci U S A, 1993 Oct 1. PMID 8415643, Free PMC Article
    3. In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs. Dragon F, et al. Mol Cell Biol, 2000 May. PMID 10757788, Free PMC Article
    4. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Lestrade L, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381836, Free PMC Article
    5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. Dieci G, et al. Genomics, 2009 Aug. PMID 19446021

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • RNA, U108 small nucleolar
    • RNA, small nucleolar E2

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of box H/ACA RNP complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002324.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      L07383
      Related
      ENST00000365493.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      39411054..39411207
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      39423979..39424132
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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