In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs

Mol Cell Biol. 2000 May;20(9):3037-48. doi: 10.1128/MCB.20.9.3037-3048.2000.

Abstract

The H/ACA small nucleolar RNAs (snoRNAs) are involved in pseudouridylation of pre-rRNAs. They usually fold into a two-domain hairpin-hinge-hairpin-tail structure, with the conserved motifs H and ACA located in the hinge and tail, respectively. Synthetic RNA transcripts and extracts from HeLa cells were used to reconstitute human U17 and other H/ACA ribonucleoproteins (RNPs) in vitro. Competition and UV cross-linking experiments showed that proteins of about 60, 29, 23, and 14 kDa interact specifically with U17 RNA. Except for U17, RNPs could be reconstituted only with full-length H/ACA snoRNAs. For U17, the 3'-terminal stem-loop followed by box ACA (U17/3'st) was sufficient to form an RNP, and U17/3'st could compete other full-length H/ACA snoRNAs for assembly. The H/ACA-like domain that constitutes the 3' moiety of human telomerase RNA (hTR), and its 3'-terminal stem-loop (hTR/3'st), also could form an RNP by binding H/ACA proteins. Hence, the 3'-terminal stem-loops of U17 and hTR have some specific features that distinguish them from other H/ACA RNAs. Antibodies that specifically recognize the human GAR1 (hGAR1) protein could immunoprecipitate H/ACA snoRNAs and hTR from HeLa cell extracts, which demonstrates that hGAR1 is a component of H/ACA snoRNPs and telomerase in vivo. Moreover, we show that in vitro-reconstituted RNPs contain hGAR1 and that binding of hGAR1 does not appear to be a prerequisite for the assembly of the other H/ACA proteins.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Arginine / chemistry
  • Base Sequence
  • Binding, Competitive
  • Cloning, Molecular
  • Glycine / chemistry
  • HeLa Cells
  • Humans
  • Models, Genetic
  • Molecular Sequence Data
  • Plasmids
  • Precipitin Tests
  • Protein Structure, Tertiary
  • RNA, Small Nucleolar / chemistry*
  • RNA, Small Nucleolar / genetics*
  • Ribonucleoproteins, Small Nuclear / genetics*
  • Ribonucleoproteins, Small Nucleolar / metabolism*
  • Telomerase / genetics*
  • Transcription, Genetic

Substances

  • GAR1 protein, human
  • GAR1 protein, mammalian
  • RNA, Small Nucleolar
  • Ribonucleoproteins, Small Nuclear
  • Ribonucleoproteins, Small Nucleolar
  • Arginine
  • Telomerase
  • Glycine