U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SSX2IP SSX family member 2 interacting protein [ Homo sapiens (human) ]

Gene ID: 117178, updated on 3-Apr-2024

Summary

Official Symbol
SSX2IPprovided by HGNC
Official Full Name
SSX family member 2 interacting proteinprovided by HGNC
Primary source
HGNC:HGNC:16509
See related
Ensembl:ENSG00000117155 MIM:608690; AllianceGenome:HGNC:16509
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ADIP; hMsd1
Summary
This gene encodes a protein that binds the cancer-testis antigen Synovial Sarcoma X breakpoint 2 protein. The encoded protein may regulate the activity of Synovial Sarcoma X breakpoint 2 protein in malignant cells. Alternate splicing results in multiple transcript variants. A pseudogene of this gene is found on chromosome 3. [provided by RefSeq, Oct 2009]
Expression
Broad expression in testis (RPKM 29.1), duodenum (RPKM 14.3) and 19 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
1p22.3
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (84643706..84690745, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (84484101..84537018, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (85109389..85156144, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1461 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1022 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1023 Neighboring gene uncharacterized LOC124904206 Neighboring gene long intergenic non-protein coding RNA 1555 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1024 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1025 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:85222320-85222891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:85240543-85241042 Neighboring gene uncharacterized LOC102724892 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1256 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1257 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1258 Neighboring gene lysophosphatidic acid receptor 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1259

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ10848, KIAA0923, MGC75026

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 
involved_in centrosome cycle IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in intraciliary transport involved in cilium assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in intraciliary transport involved in cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of Rac protein signal transduction IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of cell motility IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 
located_in cell leading edge IEA
Inferred from Electronic Annotation
more info
 
is_active_in centriolar satellite IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in centriolar satellite IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in ciliary basal body IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of protein-containing complex IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
afadin- and alpha-actinin-binding protein
Names
SSX2-interacting protein
afadin DIL domain-interacting protein
synovial sarcoma, X breakpoint 2 interacting protein

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166293.2NP_001159765.1  afadin- and alpha-actinin-binding protein isoform 1

    See identical proteins and their annotated locations for NP_001159765.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2 and 5 encode the same isoform (1).
    Source sequence(s)
    AB023140, AC114482
    Consensus CDS
    CCDS699.1
    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
    UniProtKB/TrEMBL
    B7ZB07
    Related
    ENSP00000340279.3, ENST00000342203.8
    Conserved Domains (1) summary
    pfam11559
    Location:63214
    ADIP; Afadin- and alpha -actinin-Binding
  2. NM_001166294.2NP_001159766.1  afadin- and alpha-actinin-binding protein isoform 2

    See identical proteins and their annotated locations for NP_001159766.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus than isoform 1. Both variants 3 and 4 encode the same isoform (2).
    Source sequence(s)
    AB023140, AC114482, AK294057
    Consensus CDS
    CCDS53337.1
    UniProtKB/TrEMBL
    B7ZB07
    Related
    ENSP00000474480.1, ENST00000605755.5
    Conserved Domains (1) summary
    pfam11559
    Location:36187
    ADIP; Afadin- and alpha -actinin-Binding
  3. NM_001166295.2NP_001159767.1  afadin- and alpha-actinin-binding protein isoform 2

    See identical proteins and their annotated locations for NP_001159767.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus than isoform 1. Both variants 3 and 4 encode the same isoform (2).
    Source sequence(s)
    AB023140, AC114482, AK316472
    Consensus CDS
    CCDS53337.1
    UniProtKB/TrEMBL
    B7ZB07
    Related
    ENSP00000412781.2, ENST00000437941.6
    Conserved Domains (1) summary
    pfam11559
    Location:36187
    ADIP; Afadin- and alpha -actinin-Binding
  4. NM_001166417.2NP_001159889.1  afadin- and alpha-actinin-binding protein isoform 1

    See identical proteins and their annotated locations for NP_001159889.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1). Variants 1, 2 and 5 encode the same isoform (1).
    Source sequence(s)
    AB023140, AC114482, AY367055
    Consensus CDS
    CCDS699.1
    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
    UniProtKB/TrEMBL
    B7ZB07
    Conserved Domains (1) summary
    pfam11559
    Location:63214
    ADIP; Afadin- and alpha -actinin-Binding
  5. NM_014021.4NP_054740.3  afadin- and alpha-actinin-binding protein isoform 1

    See identical proteins and their annotated locations for NP_054740.3

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR, compared to variant 1. Variants 1, 2 and 5 encode the same isoform (1).
    Source sequence(s)
    AB023140, AC114482, AL133046
    Consensus CDS
    CCDS699.1
    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
    UniProtKB/TrEMBL
    B7ZB07
    Conserved Domains (1) summary
    pfam11559
    Location:63214
    ADIP; Afadin- and alpha -actinin-Binding

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    84643706..84690745 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047444269.1XP_047300225.1  afadin- and alpha-actinin-binding protein isoform X8

  2. XM_047444234.1XP_047300190.1  afadin- and alpha-actinin-binding protein isoform X2

  3. XM_005270428.3XP_005270485.1  afadin- and alpha-actinin-binding protein isoform X1

    See identical proteins and their annotated locations for XP_005270485.1

    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
    UniProtKB/TrEMBL
    B7ZB07
    Conserved Domains (1) summary
    pfam11559
    Location:63214
    ADIP; Afadin- and alpha -actinin-Binding
  4. XM_047444231.1XP_047300187.1  afadin- and alpha-actinin-binding protein isoform X2

  5. XM_047444259.1XP_047300215.1  afadin- and alpha-actinin-binding protein isoform X7

  6. XM_047444208.1XP_047300164.1  afadin- and alpha-actinin-binding protein isoform X1

    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
  7. XM_047444262.1XP_047300218.1  afadin- and alpha-actinin-binding protein isoform X8

  8. XM_017000235.3XP_016855724.1  afadin- and alpha-actinin-binding protein isoform X2

    UniProtKB/TrEMBL
    B7ZB07
    Conserved Domains (2) summary
    pfam11559
    Location:63214
    ADIP; Afadin- and alpha -actinin-Binding
    cl25732
    Location:110356
    SMC_N; RecF/RecN/SMC N terminal domain
  9. XM_047444254.1XP_047300210.1  afadin- and alpha-actinin-binding protein isoform X7

  10. XM_047444248.1XP_047300204.1  afadin- and alpha-actinin-binding protein isoform X3

  11. XM_047444263.1XP_047300219.1  afadin- and alpha-actinin-binding protein isoform X8

  12. XM_024453015.2XP_024308783.1  afadin- and alpha-actinin-binding protein isoform X2

    UniProtKB/TrEMBL
    B7ZB07
    Conserved Domains (2) summary
    pfam11559
    Location:63214
    ADIP; Afadin- and alpha -actinin-Binding
    cl25732
    Location:110356
    SMC_N; RecF/RecN/SMC N terminal domain
  13. XM_047444256.1XP_047300212.1  afadin- and alpha-actinin-binding protein isoform X7

  14. XM_047444276.1XP_047300232.1  afadin- and alpha-actinin-binding protein isoform X10

  15. XM_047444250.1XP_047300206.1  afadin- and alpha-actinin-binding protein isoform X4

  16. XM_047444265.1XP_047300221.1  afadin- and alpha-actinin-binding protein isoform X8

  17. XM_005270429.3XP_005270486.1  afadin- and alpha-actinin-binding protein isoform X2

    See identical proteins and their annotated locations for XP_005270486.1

    UniProtKB/TrEMBL
    B7ZB07
    Conserved Domains (2) summary
    pfam11559
    Location:63214
    ADIP; Afadin- and alpha -actinin-Binding
    cl25732
    Location:110356
    SMC_N; RecF/RecN/SMC N terminal domain
  18. XM_047444257.1XP_047300213.1  afadin- and alpha-actinin-binding protein isoform X7

  19. XM_005270427.3XP_005270484.1  afadin- and alpha-actinin-binding protein isoform X1

    See identical proteins and their annotated locations for XP_005270484.1

    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
    UniProtKB/TrEMBL
    B7ZB07
    Related
    ENSP00000432261.1, ENST00000481102.5
    Conserved Domains (1) summary
    pfam11559
    Location:63214
    ADIP; Afadin- and alpha -actinin-Binding
  20. XM_006710331.3XP_006710394.1  afadin- and alpha-actinin-binding protein isoform X3

    See identical proteins and their annotated locations for XP_006710394.1

    UniProtKB/TrEMBL
    B7ZB07
    Conserved Domains (1) summary
    pfam11559
    Location:36187
    ADIP; Afadin- and alpha -actinin-Binding
  21. XM_047444228.1XP_047300184.1  afadin- and alpha-actinin-binding protein isoform X2

  22. XM_011540612.3XP_011538914.1  afadin- and alpha-actinin-binding protein isoform X7

    UniProtKB/TrEMBL
    S4R403
    Conserved Domains (1) summary
    pfam11559
    Location:63214
    ADIP; Afadin- and alpha -actinin-Binding
  23. XM_047444261.1XP_047300217.1  afadin- and alpha-actinin-binding protein isoform X7

  24. XM_047444197.1XP_047300153.1  afadin- and alpha-actinin-binding protein isoform X1

    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
  25. XM_017000236.3XP_016855725.1  afadin- and alpha-actinin-binding protein isoform X2

    UniProtKB/TrEMBL
    B7ZB07
    Conserved Domains (2) summary
    pfam11559
    Location:63214
    ADIP; Afadin- and alpha -actinin-Binding
    cl25732
    Location:110356
    SMC_N; RecF/RecN/SMC N terminal domain
  26. XM_017000234.3XP_016855723.1  afadin- and alpha-actinin-binding protein isoform X1

    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
    UniProtKB/TrEMBL
    B7ZB07
    Conserved Domains (1) summary
    pfam11559
    Location:63214
    ADIP; Afadin- and alpha -actinin-Binding
  27. XM_047444202.1XP_047300158.1  afadin- and alpha-actinin-binding protein isoform X1

    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
  28. XM_047444216.1XP_047300172.1  afadin- and alpha-actinin-binding protein isoform X1

    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
  29. XM_047444251.1XP_047300207.1  afadin- and alpha-actinin-binding protein isoform X5

  30. XM_047444252.1XP_047300208.1  afadin- and alpha-actinin-binding protein isoform X6

    Related
    ENSP00000474925.1, ENST00000476905.6
  31. XM_047444275.1XP_047300231.1  afadin- and alpha-actinin-binding protein isoform X9

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    84484101..84537018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054334208.1XP_054190183.1  afadin- and alpha-actinin-binding protein isoform X8

  2. XM_054334192.1XP_054190167.1  afadin- and alpha-actinin-binding protein isoform X2

  3. XM_054334186.1XP_054190161.1  afadin- and alpha-actinin-binding protein isoform X1

    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
  4. XM_054334191.1XP_054190166.1  afadin- and alpha-actinin-binding protein isoform X2

  5. XM_054334203.1XP_054190178.1  afadin- and alpha-actinin-binding protein isoform X7

  6. XM_054334184.1XP_054190159.1  afadin- and alpha-actinin-binding protein isoform X1

    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
  7. XM_054334205.1XP_054190180.1  afadin- and alpha-actinin-binding protein isoform X8

  8. XM_054334187.1XP_054190162.1  afadin- and alpha-actinin-binding protein isoform X2

  9. XM_054334199.1XP_054190174.1  afadin- and alpha-actinin-binding protein isoform X7

  10. XM_054334195.1XP_054190170.1  afadin- and alpha-actinin-binding protein isoform X3

  11. XM_054334206.1XP_054190181.1  afadin- and alpha-actinin-binding protein isoform X8

  12. XM_054334189.1XP_054190164.1  afadin- and alpha-actinin-binding protein isoform X2

  13. XM_054334201.1XP_054190176.1  afadin- and alpha-actinin-binding protein isoform X7

  14. XM_054334210.1XP_054190185.1  afadin- and alpha-actinin-binding protein isoform X10

  15. XM_054334196.1XP_054190171.1  afadin- and alpha-actinin-binding protein isoform X4

  16. XM_054334207.1XP_054190182.1  afadin- and alpha-actinin-binding protein isoform X8

  17. XM_054334188.1XP_054190163.1  afadin- and alpha-actinin-binding protein isoform X2

  18. XM_054334202.1XP_054190177.1  afadin- and alpha-actinin-binding protein isoform X7

  19. XM_054334180.1XP_054190155.1  afadin- and alpha-actinin-binding protein isoform X1

    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
  20. XM_054334194.1XP_054190169.1  afadin- and alpha-actinin-binding protein isoform X3

  21. XM_054334190.1XP_054190165.1  afadin- and alpha-actinin-binding protein isoform X2

  22. XM_054334200.1XP_054190175.1  afadin- and alpha-actinin-binding protein isoform X7

  23. XM_054334204.1XP_054190179.1  afadin- and alpha-actinin-binding protein isoform X7

  24. XM_054334182.1XP_054190157.1  afadin- and alpha-actinin-binding protein isoform X1

    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
  25. XM_054334193.1XP_054190168.1  afadin- and alpha-actinin-binding protein isoform X2

  26. XM_054334181.1XP_054190156.1  afadin- and alpha-actinin-binding protein isoform X1

    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
  27. XM_054334183.1XP_054190158.1  afadin- and alpha-actinin-binding protein isoform X1

    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
  28. XM_054334185.1XP_054190160.1  afadin- and alpha-actinin-binding protein isoform X1

    UniProtKB/Swiss-Prot
    A8K8W0, B4DFE3, D3DT13, J3KR02, Q6P2P8, Q6ULS1, Q7L168, Q9UIX0, Q9Y2D8
  29. XM_054334197.1XP_054190172.1  afadin- and alpha-actinin-binding protein isoform X5

  30. XM_054334198.1XP_054190173.1  afadin- and alpha-actinin-binding protein isoform X6

  31. XM_054334209.1XP_054190184.1  afadin- and alpha-actinin-binding protein isoform X9