Conserved Protein Domain Family
Syndecan

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pfam01034: Syndecan (this model, PSSM-Id:279386 is obsolete and has been replaced by 460035)
Syndecan domain
Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors.
Statistics
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PSSM-Id: 279386
Aligned: 21 rows
Threshold Bit Score: 63.44
Created: 10-Jul-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8I4H9       222 TLAN--GFYAAIAGGVLVAVITAILLVLFVVFRIRKKDEGSYALDE---PK---QarpYAS--YgYTK-ASTKEF 285 Caenorhabditis elegans
XP_001987281  54 SFFAqpGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDE---PKr-sP---ANN--S-YAKnANNREF 118 Drosophila grimshawi
EKC21353     228 yIMGrpGLLAAVIGGAVVALLLTILLVMFIVYRMRKKDEGSYPLDE---QK---Y---TNY--S-YMK-APDKEF 289 Pacific oyster
XP_003379719 207 dsFLrpGILAAVIGGSVVGLLAAILLIMFIVYRMRKKDEGSYALDDsktPP---S---YPY--A-YHK-APTREF 271 Trichinella spiralis
EFX80810     316 SFFAqpGILAAVIGGAVVGLLCAILLVMFIVYRMRKKDEGSYVLDE---PKrnsP---NSN--P-Y-N-KNSREF 379 common water flea
BAA75815     147 AFTHssQFMAALIVGGCVGLLFAVCVIMLLAYRMRKKDEGSYALDE---KK---P---STA--YqYTQgqeyya- 209 Pacific transparent ...
CDS33341     453 EILNqpGVIAAIVGSTIAGLLLLILLILFCVYRLRKKDEGSYSLEE---PQ---KgatTSG--A-YVR-APSREF 517 Hymenolepis microstoma
XP_009167809 358 NLLRqpGVIAGIVGSAVAILLLLILFILFCIYRLRKKDEGSYALDE---SK---Kl--PNM--N-YHR-TPTREF 420 Opisthorchis viverrini
CCD76283     399 KILSqpGVIAGIVGSVVLVLLLLILLILFCIYRLRKKDEGSYALDE---PK---K---LPTvdT-YTR-APTREF 462 Schistosoma mansoni
NP_001118233 144 mIFEnpAILAGMVGAVVLILLTVVLLFLFVIYRIKKKDEGSYSLDE---PH---KvkdPTA--Y-W---KDTKEF 206 purple sea urchin
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