Conserved Protein Domain Family
Syndecan

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pfam01034: Syndecan 
Syndecan domain
Syndecans are transmembrane heparin sulfate proteoglycans which are implicated in the binding of extracellular matrix components and growth factors.
Statistics
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PSSM-Id: 460035
Aligned: 14 rows
Threshold Bit Score: 88.6055
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ESO05124      246 SIFNSPVILALIIGGVILSMLIFVLVVMFIVYRLRKKDEGSYALDENLKkksKNIE-Yt-KAPQAhNEF 312 
XP_006626435  293 GLLENKEVLAGVIAGGIIGLAFAVLLVALMVYRMKKKDEGSYALDEQKH---SNGG-Y--QKPQKqEEF 355 
XP_023406350  238 SFLDRKEVLGGVIAGGIVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQ---ANGGaY--QKPTKqEEF 301 
BAA75815      147 AFTHSSQFMAALIVGGCVGLLFAVCVIMLLAYRMRKKDEGSYALDEKKP---STAYqY-----TQgQEY 207 
CAG00013      207 NLWERTEVLAAVIACGVVGFLCAVSLLLFLAYRMKKKDEGSYDLGDNKL---SNAQ-Yh-KAPTK--EF 268 
XP_007663638  115 SIFERTEVLAALIAGGVVGLLFAVFLILLLVYRMKKKDEGSYDLGKKPI--------Yk-KAPTN--EF 172 
XP_006007744  136 SIFERTEILAAVIAGCSVGLLFAILLIVLLIYRMKKKDEGSYETGKNPI--------Yk-KAPTN--EF 193 
XP_002588429 1493 ALFSHPGVMAAVIGGAVVGLLCAILLIMFIVYRMKKKDEGSYSLEDHPAkklNTNA-Yg-KTSKE-FYA 1558
EFX80810      316 SFFAQPGILAAVIGGAVVGLLCAILLVMFIVYRMRKKDEGSYVLDEPKRnspNSNP-Y--NKNSR--EF 379 
EDW02148       54 SFFAQPGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGSYALDEPKRs-pANNS-YakNANNR--EF 118 
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