3WX1,4TZ4,4CI1,3WX2,4TZU,4TZC,4CI2


Conserved Protein Domain Family
CRBN_C_like

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cd15777: CRBN_C_like 
Click on image for an interactive view with Cn3D
Thalidomide-binding C-terminal domain of cereblon (CRBN) and similar protein domains
Cereblon is part of an E3 ubiquitin ligase complex, together with damaged DNA-binding protein 1 (DDB1), CUL4A and ROC1. Cereblon interacts directly with DDB1, although the C-terminal domain characterized here does not contribute to that interaction. Ubiquination of cellular targets by this complex increases levels of FGF8 and FGF10, which was shown to affect the development of limbs and auditory vesicles in embryogenesis. The C-terminal domain of Cereblon was shown to contain the binding site for thalidomide and its analogs, a class of teratogenic drugs that exhibit an antiproliferative effect on myelomas. Mutations in CRBN, some of which map onto the C-terminal domain, were associated with autosomal recessive mental retardation, which may have to do with interactions between CRBN and ion channels in the brain.
Statistics
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PSSM-Id: 276940
Aligned: 117 rows
Threshold Bit Score: 74.9711
Created: 26-Jan-2015
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ThalidomideZn binding site
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1: Thalidomide binding site [chemical binding site], 9 residue positions
Conserved feature residue pattern:N [PSAN] x x [STCG] [WF] W [WF] [FY]Click to see conserved feature residue pattern help
Evidence:
  • Structure:4TZ4: The C-terminal domain of human cereblon binds lenalidomide, a thalidomide analog, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                          ###                           
3WX1_A         5 LCCKQCQEtEITTKNEIFSLSlc--------------------gPXAAYVNPHGYVHETLTVYKa-----sNLNLIGRPS 59  house mouse
4TZ4_C       274 LCCKQCQEtEITTKNEIFSLSlc--------------------gPMAAYVNPHGYVHETLTVYKa-----cNLNLIGRPS 328 human
XP_004924619  36 ILCRKCGA-DVADSHYLFSKQspgaltidk-----qnlfghqnaTVQTLVNPFGVKFDIVTLEKa------KCENVGPPQ 103 domestic silkworm
KDR24418      42 LLCRGCGA-DIADSSYIHNRFssealiygn-----qslfgkqsvAVQLLENPLGIRFRVLVVNKa------KCIGVDEWH 109 Zootermopsis ne...
XP_003427162  36 ILCRLCGA-DLADAKSIVNHLspyafvivn-----qtlfqrkgvEVQLLKNPLGIKFQSITLSNs------KCAPVHNWQ 103 jewel wasp
ETN58946      35 FVCRTCGN-DVSVANLLFDKYsplalsatn-----htltegrsvLIQEVQNSRGFRYTIFLVKQa-----sCQKITAQRW 103 Anopheles darlingi
ESL10559      41 LLCTYCRM-PIAQYGEILSHRatdawasqvytyelelfdnnlplWCYSATNPSAHRFDLVRCDAaialghrCVRLTGAWS 119 Trypanosoma ran...
ETV84306      85 MRCRFCGA-HLAWKHHYQHLPdeskahaknt---rtetslgehgEVVYFDNPAGVEFELASFQHs------DGVPSDAYT 154 Aphanomyces astaci
KDO27284      78 LRCRMCGA-HLAWKTDAMALPaatkgraksy---rheaglgdagEVTYFDGPLGDEFELAAFELt------EASATESYS 147 Saprolegnia par...
XP_001230896  42 FICRTCGN-DVSVANLAFDKYtplalsatn-----hsftetrsvLIQEVQNPLGIRFHIFLVKQa------SCAKVHPWT 109 Anopheles gambi...
Feature 1           ###     #             # #                                      
3WX1_A        60 T-VHSWFPGYAWTIAQCKICASHIGWKFTAtkk------------------dxsPQKFWGLTRSAL 106 house mouse
4TZ4_C       329 T-EHSWFPGYAWTVAQCKICASHIGWKFTAtkk------------------dmsPQKFWGLTRSAL 375 human
XP_004924619 104 G-ADSWFPGYTWRICACPHCGQHLGWTFEStdlslt-------------kakehVHSFHGFILSNV 155 domestic silkworm
KDR24418     110 S-EFSWYPGYAWKHCLCSHCGHHLGWIFEPlasavv------------drktasDQGFYGLILDNL 162 Zootermopsis nevadensis
XP_003427162 104 Q-DFSWYPGYAWKPCICNHCRVHHGWLFEPietvnl------------stklpsKKGFFVLKLNSL 156 jewel wasp
ETN58946     104 IaKSSWFPGYAWKFCMCPKCRMVVGFMFEPietati------------ernfpsDAGFYALIHNSI 157 Anopheles darlingi
ESL10559     120 A-EHTFFLGHEWRCAVCKTCNSFLGWGFRPslqpsndvedaaaapaadveatdeGLSFVGIILTRC 184 Trypanosoma rangeli SC58
ETV84306     155 Q-QDTFFDSYNWRALACPRCAKHVGWKFTHv----------------------lHDQCMADTQRQL 197 Aphanomyces astaci
KDO27284     148 E-ENSFFDDYNWRVLTCPRCARHVGWKFTHd----------------------lQEQCMKMAKQHL 190 Saprolegnia parasitica CBS 22...
XP_001230896 110 I-KSTWFPGYAWKVCVCPKCHTLLGWMFEPvesata------------eqsfpsEAGFYAIIFQNI 162 Anopheles gambiae str. PEST

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