3OG8,3WX1,4GL2,3EQT


Conserved Protein Domain Family
RLR_C_like

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cd15803: RLR_C_like 
Click on image for an interactive view with Cn3D
C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
Retinoic acid-inducible gene (RIG)-I-like Receptors (RLRs) are cytoplasmic RNA receptors that recognize non-self RNA and act as molecular sensors to detect viral pathogens. They play crucial roles in innate antiviral responses, including the production of proinflammatory cytokines and type I interferon. There are three RLRs in vertebrates, RIG-I, LGP2, and MDA5. They are characterized by a central DExD/H-box helicase domain and a C-terminal domain, both of which are responsible for binding viral RNA. Cereblon is part of an E3 ubiquitin ligase complex, together with damaged DNA binding protein 1 (DDB1), CUL4A and ROC1. Cereblon interacts directly with DDB1, although the C-terminal domain characterized here does not contribute to that interaction. The C-terminal domain of Cereblon was shown to contain the binding site for thalidomide and its analogs, a class of teratogenic drugs that exhibit an antiproliferative effect on myelomas. Mutations in CRBN, some of which map onto the C-terminal domain, were associated with autosomal recessive mental retardation, which may have to do with interactions between CRBN and ion channels in the brain. RLRs and Cereblon contain a common conserved zinc binding site in their C-terminal domains.
Statistics
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PSSM-Id: 276941
Aligned: 5 rows
Threshold Bit Score: 91.8111
Created: 22-Oct-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:C C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #                                                                          
3OG8_A         8 LLCRKCKAl-ACYTa--dVRVIEes-----------------------------hYTVLGdafkeCFVSRPHPKPkqf-- 53  human
3WX1_A         5 LCCKQCQEteITTKn--eIFSLSlcgpxaayv--------------nphgyvhetLTVYKa---sNLNLIGRPSTvhs-- 63  house mouse
4GL2_A       587 FLCKNCSVl-ACSGe--dIHVIEkm-----------------------------hHVNMTpefkeLYIVRENKTLqkk-- 632 human
3EQT_A        14 LLCINCMVa-VGHGs--dLRKVEgt-----------------------------hHVNVNpnfsnYYNVSRDPVVinkv- 60  human
XP_003083612 104 PLQHHCSAv-SCVAearmVRFMSnawtwerghelfpvvcasrimvapgggferwvVVAGKq---nDVRVIHSAGSyhpdy 179 Ostreococcus tauri
Feature 1                    #    #                            
3OG8_A        54 --ssFEKRAKIFCArqnCSHDWGIHVKYk-----TFEIPVIKIESF 92  human
3WX1_A        64 -wfpGYAWTIAQCKi--CASHIGWKFTAtkkdxsPQKFWGLTRSAL 106 house mouse
4GL2_A       633 -cadYQINGEIICK---CGQAWGTMMVHk-----GLDLPCLKIRNF 669 human
3EQT_A        61 -fkdWKPGGVISCRn--CGEVWGLQMIYk-----SVKLPVLKVRSM 98  human
XP_003083612 180 twfqGYAWRAVSCRd--CSTFIGFHFTPtr---nEKELERVRRESQ 220 Ostreococcus tauri

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