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Report for CCDS13417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13417.1 Public Homo sapiens 20 ZNFX1 24 110 108 CCDS HistoryNCBI Gene:57169Re-query CCDS DB by CCDS ID:13417.1Re-query CCDS DB by GeneID:57169See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13417.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371752.5 ENSP00000360817.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371752.5Link to Ensembl Protein Viewer:ENSP00000360817.1Re-query CCDS DB by Nucleotide ID:ENST00000371752Re-query CCDS DB by Protein ID:ENSP00000360817
Original member Current member EBI ENST00000396105.6 ENSP00000379412.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396105.6Link to Ensembl Protein Viewer:ENSP00000379412.1Re-query CCDS DB by Nucleotide ID:ENST00000396105Re-query CCDS DB by Protein ID:ENSP00000379412
Original member Current member NCBI NM_021035.3 NP_066363.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021035.3Link to Protein Sequence:NP_066363.1Re-query CCDS DB by Nucleotide ID:NM_021035Re-query CCDS DB by Protein ID:NP_066363Link to BLAST:NP_066363.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066363.1 1918 Q9P2E3-1 1918 100% 0 0

Chromosomal Locations for CCDS 13417.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 49247267 49249711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49251527 49251622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49252720 49252830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49253666 49253811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49254495 49254649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49255808 49255947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49257417 49257664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49260463 49260577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49263334 49263483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49264716 49264864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49266135 49266266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49269942 49271750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49275779 49275839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5757 nt):
ATGGAGGAGAGAAGACCTCATCTGGATGCCAGGCCCAGGAATTCCCATACCAACCACAGAGGCCCTGTGG
AT
GGAGAGTTACCACCAAGAGCTAGAAATCAGGCCAATAACCCACCAGCCAATGCTCTCCGAGGAGGAGC
C
AGCCACCCTGGAAGGCATCCTAGGGCCAACAACCATCCTGCTGCTTACTGGCAGAGGGAAGAGAGATTT
AGG
GCCATGGGCAGGAACCCACATCAAGGAAGGAGGAACCAGGAGGGGCATGCCAGCGACGAAGCTAGAG
AC
CAAAGACATGACCAGGAGAATGACACCAGGTGGAGAAATGGCAACCAGGACTGTAGGAACCGCAGACC
A
CCATGGTCCAATGACAACTTCCAGCAGTGGCGGACTCCCCACCAGAAGCCTACAGAACAGCCACAGCAG
GCG
AAGAAACTGGGCTACAAGTTCTTAGAAAGTCTTCTGCAGAAAGACCCTTCTGAGGTGGTCATCACAC
TT
GCCACAAGTTTAGGGCTGAAAGAGCTCCTTTCTCATTCTTCCATGAAATCTAACTTCCTTGAGCTCAT
C
TGTCAGGTTCTTCGGAAGGCTTGTAGCTCCAAAATGGATCGCCAGAGTGTTCTCCATGTACTGGGCATA
TTG
AAAAACTCCAAATTTCTCAAAGTCTGCCTGCCTGCTTATGTGGTAGGGATGATCACTGAACCCATCC
CT
GACATCCGAAACCAGTATCCAGAGCACATAAGCAACATCATCTCCCTCCTCCAGGACCTTGTAAGTGT
C
TTCCCTGCCAGCTCTGTGCAGGAAACTTCCATGCTGGTTTCCCTCCTGCCAACCTCTCTTAATGCTCTG
AGA
GCCTCTGGTGTTGACATAGAAGAGGAAACGGAGAAGAACCTGGAAAAGGTACAGACTATCATTGAAC
AT
CTGCAGGAAAAGAGGCGAGAGGGCACTTTGAGAGTGGATACCTACACTCTAGTGCAGCCTGAGGCAGA
A
GACCATGTTGAGAGCTACCGAACCATGCCCATTTACCCTACCTACAATGAAGTGCACTTGGATGAGAGG
CCC
TTCCTTCGCCCCAATATCATTTCTGGAAAATACGACAGCACTGCTATCTATCTGGATACCCACTTCC
GG
CTCCTGCGAGAAGATTTCGTCAGACCTTTACGGGAAGGTATTTTGGAACTTCTCCAAAGCTTTGAAGA
C
CAGGGCCTGAGGAAGAGAAAGTTTGATGACATCCGAATCTACTTTGACACCAGGATTATCACCCCCATG
TGT
TCATCATCAGGCATAGTCTACAAGGTGCAGTTTGACACAAAACCACTGAAGTTTGTTCGCTGGCAGA
AT
TCCAAACGATTGCTCTATGGGTCTTTGGTATGCATGTCCAAGGACAACTTCGAGACATTTCTTTTTGC
C
ACCGTATCTAACAGGGAGCAGGAAGATCTCTGCCGAGGAATTGTCCAGCTCTGCTTCAATGAGCAAAGC
CAA
CAGCTGCTAGCAGAGGTCCAGCCCTCTGACTCTTTCCTCATGGTAGAGACAACTGCATACTTTGAGG
CC
TACAGGCACGTCCTGGAAGGACTCCAGGAGGTCCAGGAGGAAGATGTTCCCTTCCAGAGGAATATCGT
G
GAGTGTAACTCTCATGTGAAGGAGCCAAGGTACTTGCTAATGGGGGGCAGATACGACTTTACCCCCTTA
ATA
GAGAATCCTTCAGCCACTGGGGAATTTCTAAGAAATGTCGAGGGTTTGAGACATCCCAGAATTAATG
TC
TTAGATCCTGGCCAGTGGCCCTCAAAAGAAGCCCTGAAGCTGGATGACTCCCAGATGGAAGCCTTGCA
G
TTTGCTCTCACAAGGGAACTGGCTATTATTCAAGGACCTCCTGGAACAGGCAAAACCTATGTGGGTCTA
AAA
ATTGTTCAGGCCCTCCTAACCAACGAGTCTGTTTGGCAAATTAGCCTCCAGAAGTTCCCCATCTTGG
TT
GTGTGTTATACTAATCATGCTTTGGACCAGTTTCTGGAAGGCATCTACAATTGTCAGAAGACCAGCAT
T
GTGCGGGTGGGTGGAAGGAGCAACAGTGAAATCCTGAAGCAGTTCACCCTAAGGGAGCTGAGGAACAAG
CGG
GAATTCCGCCGCAACCTCCCCATGCACCTCCGAAGGGCCTACATGAGTATCATGACACAGATGAAGG
AG
TCAGAGCAAGAGCTTCATGAAGGAGCCAAGACCCTGGAGTGCACCATGCGTGGTGTCCTACGGGAACA
G
TACCTGCAGAAGTACATCTCACCCCAGCACTGGGAAAGTCTCATGAATGGACCAGTGCAGGATAGTGAA
TGG
ATTTGCTTCCAGCACTGGAAGCATTCCATGATGCTGGAGTGGCTAGGTCTTGGTGTCGGTTCTTTCA
CG
CAAAGTGTTTCTCCAGCAGGACCTGAGAATACAGCCCAGGCAGAAGGGGATGAGGAGGAAGAAGGGGA
G
GAGGAGAGTTCGCTGATAGAGATCGCAGAGGAAGCTGACCTGATTCAAGCAGACCGGGTGATTGAGGAG
GAA
GAGGTGGTGAGGCCCCAGCGGCGGAAGAAGGAAGAGAGTGGAGCAGACCAGGAGTTGGCTAAAATGC
TT
CTGGCCATGAGGCTAGACCATTGTGGCACTGGGACAGCAGCTGGACAGGAGCAAGCCACAGGAGAGTG
G
CAGACCCAGCGCAACCAGAAAAAGAAAATGAAAAAAAGAGTGAAGGATGAGCTTCGCAAACTGAACACC
ATG
ACTGCAGCCGAGGCCAACGAGATCGAGGATGTTTGGCAGCTGGACCTCAGTTCTCGCTGGCAGCTTT
AT
AGGCTCTGGCTACAGTTGTACCAGGCTGACACCCGCCGGAAGATCCTCAGCTATGAACGCCAGTACCG
C
ACATCAGCAGAAAGAATGGCCGAGCTGAGACTCCAGGAAGACCTGCACATTCTTAAAGATGCCCAGGTT
GTA
GGAATGACAACCACAGGTGCTGCCAAATACCGCCAGATCCTACAGAAGGTGGAGCCGAGGATTGTCA
TA
GTGGAAGAAGCTGCGGAAGTCCTTGAGGCCCATACCATTGCCACATTGAGCAAAGCTTGCCAGCACCT
C
ATTTTGATTGGGGACCACCAGCAGCTGCGCCCCAGTGCCAACGTGTATGATCTGGCCAAGAACTTCAAC
CTT
GAGGTGTCCCTTTTTGAACGGCTAGTGAAAGTAAACATTCCCTTTGTCCGTCTGAATTACCAGCACC
GT
ATGTGCCCTGAAATTGCCCGCCTTTTGACCCCCCACATTTACCAGGATCTGGAGAATCATCCATCTGT
T
CTTAAGTATGAGAAGATTAAGGGGGTGTCTTCCAACCTTTTCTTTGTAGAACACAACTTTCCTGAACAG
GAA
ATCCAAGAGGGCAAAAGCCATCAGAACCAGCATGAGGCTCACTTTGTGGTAGAGCTGTGCAAGTACT
TC
CTGTGCCAGGAATACCTGCCTTCCCAGATCACCATCCTCACTACCTATACCGGGCAGCTCTTCTGCCT
G
CGCAAACTGATGCCTGCCAAGACATTTGCTGGCGTCAGGGTCCATGTTGTGGACAAATACCAAGGGGAA
GAG
AATGACATCATCCTCCTCTCGCTAGTGCGGAGCAACCAAGAAGGCAAGGTGGGTTTTCTGCAGATAT
CC
AACCGCATCTGTGTGGCCTTGTCCCGAGCCAAGAAGGGAATGTACTGCATCGGAAACATGCAGATGCT
G
GCCAAGGTGCCCCTGTGGAGCAAGATCATTCATACACTTCGAGAGAACAATCAAATAGGCCCCATGCTC
CGG
CTCTGCTGCCAGAACCACCCTGAAACCCACACCTTAGTATCCAAAGCTTCTGACTTCCAAAAAGTAC
CC
GAAGGAGGCTGCAGCCTGCCCTGCGAGTTCCGCCTGGGCTGTGGGCATGTCTGCACCCGTGCCTGCCA
C
CCTTATGACTCTTCACACAAGGAGTTCCAATGCATGAAGCCATGCCAGAAGGTCATCTGTCAGGAAGGG
CAC
CGGTGTCCCCTTGTTTGCTTCCAGGAGTGTCAGCCTTGTCAGGTGAAGGTGCCCAAAACCATTCCTC
GG
TGCGGCCATGAACAAATGGTCCCTTGTTCCGTGCCTGAGTCAGATTTCTGCTGCCAGGAGCCTTGCTC
C
AAGTCTCTGAGATGTGGGCACAGATGCAGCCACCCATGTGGTGAGGACTGTGTGCAGCTGTGTTCAGAA
ATG
GTCACCATAAAACTCAAGTGTGGGCACAGTCAACCGGTAAAATGTGGTCATGTGGAAGGCCTCCTGT
AT
GGTGGTCTGCTAGTCAAGTGTACCACAAAGTGTGGCACTATCTTGGACTGCGGGCATCCTTGCCCAGG
C
TCCTGCCACAGCTGCTTCGAAGGGCGTTTCCATGAACGCTGTCAGCAGCCCTGCAAGCGCCTGCTTATC
TGC
TCACACAAGTGCCAGGAACCATGCATTGGTGAGTGCCCACCCTGCCAGCGGACCTGTCAGAACCGCT
GT
GTCCACAGCCAGTGCAAGAAGAAATGTGGGGAGCTGTGTAGTCCCTGCGTGGAACCCTGTGTCTGGCG
C
TGCCAGCACTACCAGTGCACCAAACTCTGCTCTGAGCCCTGCAACCGACCCCCATGCTATGTGCCTTGT
ACT
AAGCTGCTAGTTTGTGGCCACCCCTGCATTGGTCTCTGTGGGGAGCCATGCCCCAAGAAATGCCGGA
TC
TGCCACATGGATGAGGTCACCCAAATATTCTTTGGCTTTGAGGATGAGCCTGATGCCCGCTTTGTGCA
G
CTGGAAGACTGCAGCCACATCTTTGAGGTGCAAGCCCTAGACCGCTACATGAATGAACAGAAGGATGAT
GAA
GTCGCCATCAGATTGAAAGTCTGCCCTATCTGCCAGGTGCCCATCCGCAAAAACCTGAGGTATGGAA
CT
AGCATAAAACAGCGGCTAGAAGAGATTGAAATCATCAAGGAAAAGATCCAGGGCTCAGCAGGGGAAAT
A
GCAACCAGCCAGGAACGGCTTAAGGCCCTGCTGGAGAGGAAGAGCCTCCTCCACCAGCTGCTTCCTGAA
GAC
TTCCTGATGTTAAAGGAGAAGCTGGCCCAGAAAAATCTGTCAGTGAAGGACCTGGGTCTGGTTGAGA
AT
TACATCAGCTTCTATGACCACCTGGCCAGCCTGTGGGATTCCCTGAAAAAGATGCATGTCTTAGAAGA
G
AAAAGAGTGAGGACTCGACTAGAACAGGTCCATGAGTGGCTGGCCAAGAAGCGCTTGAGCTTCACTAGC
CAG
GAACTAAGTGACCTCCGAAGTGAAATCCAGAGGCTCACATACCTGGTGAACCTTCTGACCCGCTACA
AG
ATAGCAGAGAAGAAGGTGAAAGATAGCATAGCAGTAGAGGTCTATAGTGTCCAGAATATCCTTGAGAA
A
ACATGTAAGTTCACCCAAGAGGATGAACAACTTGTGCAGGAAAAGATGGAAGCTCTGAAAGCCACCCTT
CCC
TGCTCTGGCCTGGGCATCTCAGAGGAAGAGCGAGTGCAGATTGTCAGTGCCATAGGTTATCCTCGTG
GT
CACTGGTTCAAGTGCCGCAATGGCCATATCTATGTGATTGGCGATTGTGGGGGAGCCATGGAGAGGGG
C
ACGTGTCCTGACTGTAAGGAAGTGATTGGTGGCACAAATCATACTCTGGAAAGAAGCAACCAGCTTGCT
TCT
GAAATGGATGGAGCCCAGCATGCTGCCTGGTCTGACACGGCCAACAACCTGATGAACTTTGAGGAGA
TC
CAGGGGATGATGTAG


Translation (1918 aa):
MEERRPHLDARPRNSHTNHRGPVDGELPPRARNQANNPPANALRGGASHPGRHPRANNHPAAYWQREERF
R
AMGRNPHQGRRNQEGHASDEARDQRHDQENDTRWRNGNQDCRNRRPPWSNDNFQQWRTPHQKPTEQPQQ
A
KKLGYKFLESLLQKDPSEVVITLATSLGLKELLSHSSMKSNFLELICQVLRKACSSKMDRQSVLHVLGI
L
KNSKFLKVCLPAYVVGMITEPIPDIRNQYPEHISNIISLLQDLVSVFPASSVQETSMLVSLLPTSLNAL
R
ASGVDIEEETEKNLEKVQTIIEHLQEKRREGTLRVDTYTLVQPEAEDHVESYRTMPIYPTYNEVHLDER
P
FLRPNIISGKYDSTAIYLDTHFRLLREDFVRPLREGILELLQSFEDQGLRKRKFDDIRIYFDTRIITPM
C
SSSGIVYKVQFDTKPLKFVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNREQEDLCRGIVQLCFNEQS
Q
QLLAEVQPSDSFLMVETTAYFEAYRHVLEGLQEVQEEDVPFQRNIVECNSHVKEPRYLLMGGRYDFTPL
I
ENPSATGEFLRNVEGLRHPRINVLDPGQWPSKEALKLDDSQMEALQFALTRELAIIQGPPGT
GKTYVGL
K
IVQALLTNESVWQISLQKFPILVVCYTNHALDQFLE
GIYNCQKTSIVRVGGRSNSEILKQFTLRELRNK
R
EFRRNLPMHLRRAYMS
IMTQMKESEQELHEGAKTLECTMRGVLREQYLQKYISPQHWESLMNGPVQDSE
W
ICFQHWKHSMMLEWLGLGVGSFTQSVSPAGPENT
AQAEGDEEEEGEEESSLIEIAEEADLIQADRVIEE
E
EVVRPQRRKKEESGADQELAKMLLAMRLDHCGTGTAAGQEQATGEWQ
TQRNQKKKMKKRVKDELRKLNT
M
TAAEANEIEDVWQLDLSSRWQLY
RLWLQLYQADTRRKILSYERQYRTSAERMAELRLQEDLHILKDAQV
V
GMTTT
GAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFN
L
EVSLFERLVKVNIPFVRLNYQ
HRMCPEIARLLTPHIYQDLENHPSVLKYEKIKGVSSNLFFVEHNFPEQ
E
IQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQGE
E
NDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLRENNQIGPML
R
LCCQNHPETHTLVSKASDFQKVPEGGCSLPCEFRLGCGHVCTRACHPYDSSHKEFQCMKPCQKVICQEG
H
RCPLVCFQECQPCQVKVPKTIPRCGHEQMVPCSVPESDFCCQEPCSKSLRCGHRCSHPCGEDCVQLCSE
M
VTIKLKCGHSQPVKCGHVEGLLYGGLLVKCTTKCGTILDCGHPCPGSCHSCFEGRFHERCQQPCKRLLI
C
SHKCQEPCIGECPPCQRTCQNRCVHSQCKKKCGELCSPCVEPCVWRCQHYQCTKLCSEPCNRPPCYVPC
T
KLLVCGHPCIGLCGEPCPKKCRICHMDEVTQIFFGFEDEPDARFVQLEDCSHIFEVQALDRYMNEQKDD
E
VAIRLKVCPICQVPIRKNLRYGTSIKQRLEEIEIIKEKIQGSAGEIATSQERLKALLERKSLLHQLLPE
D
FLMLKEKLAQKNLSVKDLGLVENYISFYDHLASLWDSLKKMHVLEEKRVRTRLEQVHEWLAKKRLSFTS
Q
ELSDLRSEIQRLTYLVNLLTRYKIAEKKVKDSIAVEVYSVQNILEKTCKFTQEDEQLVQEKMEALKATL
P
CSGLGISEEERVQIVSAIGYPRGHWFKCRNGHIYVIGDCGGAMERGTCPDCKEVIGGTNHTLERSNQLA
S
EMDGAQHAAWSDTANNLMNFEEIQGMM




Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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