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Report for CCDS2570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2570.1 Public Homo sapiens 3 OXTR 24 110 108 CCDS HistoryNCBI Gene:5021Re-query CCDS DB by CCDS ID:2570.1Re-query CCDS DB by GeneID:5021See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2570.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316793.8 ENSP00000324270.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316793.8Link to Ensembl Protein Viewer:ENSP00000324270.2Re-query CCDS DB by Nucleotide ID:ENST00000316793Re-query CCDS DB by Protein ID:ENSP00000324270
Original member Current member NCBI NM_000916.4 NP_000907.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000916.4Link to Protein Sequence:NP_000907.2Re-query CCDS DB by Nucleotide ID:NM_000916Re-query CCDS DB by Protein ID:NP_000907Link to BLAST:NP_000907.2
Original member Current member NCBI NM_001354653.2 NP_001341582.1 Accepted alive Link to Nucleotide Sequence:NM_001354653.2Link to Protein Sequence:NP_001341582.1Re-query CCDS DB by Nucleotide ID:NM_001354653Re-query CCDS DB by Protein ID:NP_001341582Link to BLAST:NP_001341582.1
Original member Current member NCBI NM_001354654.2 NP_001341583.1 Accepted alive Link to Nucleotide Sequence:NM_001354654.2Link to Protein Sequence:NP_001341583.1Re-query CCDS DB by Nucleotide ID:NM_001354654Re-query CCDS DB by Protein ID:NP_001341583Link to BLAST:NP_001341583.1
Original member Current member NCBI NM_001354655.2 NP_001341584.1 Accepted alive Link to Nucleotide Sequence:NM_001354655.2Link to Protein Sequence:NP_001341584.1Re-query CCDS DB by Nucleotide ID:NM_001354655Re-query CCDS DB by Protein ID:NP_001341584Link to BLAST:NP_001341584.1
Original member Current member NCBI NM_001354656.3 NP_001341585.1 Accepted alive Link to Nucleotide Sequence:NM_001354656.3Link to Protein Sequence:NP_001341585.1Re-query CCDS DB by Nucleotide ID:NM_001354656Re-query CCDS DB by Protein ID:NP_001341585Link to BLAST:NP_001341585.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000907.2 389 P30559 389 100% 0 0
NP_001341582.1 389 P30559 389 100% 0 0
NP_001341583.1 389 P30559 389 100% 0 0
NP_001341584.1 389 P30559 389 100% 0 0
NP_001341585.1 389 P30559 389 100% 0 0

Chromosomal Locations for CCDS 2570.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 8752977 8753224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8767266 8768187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGGAGGGCGCGCTCGCAGCCAACTGGAGCGCCGAGGCAGCCAACGCCAGCGCCGCGCCGCCGGGGGCCG
AG
GGCAACCGCACCGCCGGACCCCCGCGGCGCAACGAGGCCCTGGCGCGCGTGGAGGTGGCGGTGCTGTG
T
CTCATCCTGCTCCTGGCGCTGAGCGGGAACGCGTGTGTGCTGCTGGCGCTGCGCACCACACGCCAGAAG
CAC
TCGCGCCTCTTCTTCTTCATGAAGCACCTAAGCATCGCCGACCTGGTGGTGGCAGTGTTTCAGGTGC
TG
CCGCAGTTGCTGTGGGACATCACCTTCCGCTTCTACGGGCCCGACCTGCTGTGCCGCCTGGTCAAGTA
C
TTGCAGGTGGTGGGCATGTTCGCCTCCACCTACCTGCTGCTGCTCATGTCCCTGGACCGCTGCCTGGCC
ATC
TGCCAGCCGCTGCGCTCGCTGCGCCGCCGCACCGACCGCCTGGCAGTGCTCGCCACGTGGCTCGGCT
GC
CTGGTGGCCAGCGCGCCGCAGGTGCACATCTTCTCTCTGCGCGAGGTGGCTGACGGCGTCTTCGACTG
C
TGGGCCGTCTTCATCCAGCCCTGGGGACCCAAGGCCTACATCACATGGATCACGCTAGCTGTCTACATC
GTG
CCGGTCATCGTGCTCGCTGCCTGCTACGGCCTTATCAGCTTCAAGATCTGGCAGAACTTGCGGCTCA
AG
ACCGCTGCAGCGGCGGCGGCCGAGGCGCCAGAGGGCGCGGCGGCTGGCGATGGGGGGCGCGTGGCCCT
G
GCGCGTGTCAGCAGCGTCAAGCTCATCTCCAAGGCCAAGATCCGCACGGTCAAGATGACTTTCATCATC
GTG
CTGGCCTTCATCGTGTGCTGGACGCCTTTCTTCTTCGTGCAGATGTGGAGCGTCTGGGATGCCAACG
CG
CCCAAGGAAGCCTCGGCCTTCATCATCGTCATGCTCCTGGCCAGCCTCAACAGCTGCTGCAACCCCTG
G
ATCTACATGCTGTTCACGGGCCACCTCTTCCACGAACTCGTGCAGCGCTTCCTGTGCTGCTCCGCCAGC
TAC
CTGAAGGGCAGACGCCTGGGAGAGACGAGTGCCAGCAAAAAGAGCAACTCGTCCTCCTTTGTCCTGA
GC
CATCGCAGCTCCAGCCAGAGGAGCTGCTCCCAGCCATCCACGGCGTGA


Translation (389 aa):
MEGALAANWSAEAANASAAPPGAEGNRTAGPPRRNEALARVEVAVLCLILLLALSGNACVLLALRTTRQK
H
SRLFFFMKHLSIADLVVAVFQVLPQLLWDITFRFYGPDLLCRLVKYLQVVGMFASTYLLLLMSLDRCLA
I
CQPLRSLRRRTDRLAVLATWLGCLVASAPQVHIFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYI
V
PVIVLAACYGLISFKIWQNLRLKTAAAAAAEAPEGAAAGDGGRVALARVSSVKLISKAKIRTVKMTFII
V
LAFIVCWTPFFFVQMWSVWDANAPKE
ASAFIIVMLLASLNSCCNPWIYMLFTGHLFHELVQRFLCCSAS
Y
LKGRRLGETSASKKSNSSSFVLSHRSSSQRSCSQPSTA




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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