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Report for CCDS44074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44074.1 Public Homo sapiens 1 PAX7 24 110 108 CCDS HistoryNCBI Gene:5081Re-query CCDS DB by CCDS ID:44074.1Re-query CCDS DB by GeneID:5081See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44074.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420770.7 ENSP00000403389.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000420770.7Link to Ensembl Protein Viewer:ENSP00000403389.2Re-query CCDS DB by Nucleotide ID:ENST00000420770Re-query CCDS DB by Protein ID:ENSP00000403389
Original member Current member NCBI NM_001135254.2 NP_001128726.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001135254.2Link to Protein Sequence:NP_001128726.1Re-query CCDS DB by Nucleotide ID:NM_001135254Re-query CCDS DB by Protein ID:NP_001128726Link to BLAST:NP_001128726.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128726.1 505 P23759-3 505 100% 0 0

Chromosomal Locations for CCDS 44074.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 18631604 18631688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18634303 18634538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18635111 18635240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18636237 18636371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18691754 18691953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18700653 18700818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18703094 18703296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18735632 18735878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18744814 18744929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGCGGCCCTTCCCGGCACGGTACCGAGAATGATGCGGCCGGCTCCGGGGCAGAACTACCCCCGCACGG
GA
TTCCCTTTGGAAGTGTCCACCCCGCTTGGCCAAGGCCGGGTCAATCAGCTGGGAGGGGTCTTCATCAA
T
GGGCGACCCCTGCCTAACCACATCCGCCACAAGATAGTGGAGATGGCCCACCATGGCATCCGGCCCTGT
GTC
ATCTCCCGACAGCTGCGTGTCTCCCACGGCTGCGTCTCCAAGATTCTTTGCCGCTACCAGGAGACCG
GG
TCCATCCGGCCTGGGGCCATCGGCGGCAGCAAGCCCAGACAGGTGGCGACTCCGGATGTAGAGAAAAA
G
ATTGAGGAGTACAAGAGGGAAAACCCAGGCATGTTCAGCTGGGAGATCCGGGACAGGCTGCTGAAGGAT
GGG
CACTGTGACCGAAGCACTGTGCCCTCAGGTTTAGTGAGTTCGATTAGCCGCGTGCTCAGAATCAAGT
TC
GGGAAGAAAGAGGAGGAGGATGAAGCGGACAAGAAGGAGGACGACGGCGAAAAGAAGGCCAAACACAG
C
ATCGACGGCATCCTGGGCGACAAAGGGAACCGGCTGGACGAGGGCTCGGATGTGGAGTCGGAACCTGAC
CTC
CCACTGAAGCGCAAGCAGCGACGCAGTCGGACCACATTCACGGCCGAGCAGCTGGAGGAGCTGGAGA
AG
GCCTTTGAGAGGACCCACTACCCAGACATATACACCCGCGAGGAGCTGGCGCAGAGGACCAAGCTGAC
A
GAGGCGCGTGTGCAGGTCTGGTTCAGTAACCGCCGCGCCCGTTGGCGTAAGCAGGCAGGAGCCAACCAG
CTG
GCGGCGTTCAACCACCTTCTGCCAGGAGGCTTCCCACCCACCGGCATGCCCACGCTGCCCCCCTACC
AG
CTGCCGGACTCCACCTACCCCACCACCACCATCTCCCAAGATGGGGGCAGCACTGTGCACCGGCCTCA
G
CCCCTGCCACCGTCCACCATGCACCAGGGCGGGCTGGCTGCAGCGGCTGCAGCCGCCGACACCAGCTCT
GCC
TACGGAGCCCGCCACAGCTTCTCCAGCTACTCTGACAGCTTCATGAATCCGGCGGCGCCCTCCAACC
AC
ATGAACCCGGTCAGCAACGGCCTGTCTCCTCAGGTGATGAGCATCTTGGGCAACCCCAGTGCGGTGCC
C
CCGCAGCCACAGGCTGACTTCTCCATCTCCCCGCTGCATGGCGGCCTGGACTCGGCCACCTCCATCTCA
GCC
AGCTGCAGCCAGCGGGCCGACTCCATCAAGCCAGGAGACAGCCTGCCCACCTCCCAGGCCTACTGCC
CA
CCCACCTACAGCACCACCGGCTACAGCGTGGACCCCGTGGCCGGCTATCAGTACGGCCAGTACGGCCA
G
ACTGCTGTTGATTATCTGGCCAAAAATGTGAGCCTCTCCACCCAGCGTCGCATGAAGCTCGGGGAGCAC
TCT
GCTGTGCTGGGACTCCTGCCTGTGGAAACTGGCCAGGCCTACTAG


Translation (505 aa):
MAALPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPC
V
ISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPR
QVATPDVEKKIEEYKRENPGMFSWEIRDRLLKD
G
HCDRSTVPS
GLVSSISRVLRIKFGKKEEEDEADKKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPD
L
PLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQ
VWFSNRRARWRKQAGANQ
L
AAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQ
DGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSS
A
YGARHSFSSYSDSFMNPAAPSNHMNPVSNGLSPQ
VMSILGNPSAVPPQPQADFSISPLHGGLDSATSIS
A
SCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQ
TAVDYLAKNVSLSTQRRMKLGEH
S
AVLGLLPVETGQAY




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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