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Report for CCDS3868.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3868.1 Public Homo sapiens 5 IRX2 24 110 108 CCDS HistoryNCBI Gene:153572Re-query CCDS DB by CCDS ID:3868.1Re-query CCDS DB by GeneID:153572See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3868.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302057.6 ENSP00000307006.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302057.6Link to Ensembl Protein Viewer:ENSP00000307006.5Re-query CCDS DB by Nucleotide ID:ENST00000302057Re-query CCDS DB by Protein ID:ENSP00000307006
Original member Current member EBI ENST00000382611.10 ENSP00000372056.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382611.10Link to Ensembl Protein Viewer:ENSP00000372056.6Re-query CCDS DB by Nucleotide ID:ENST00000382611Re-query CCDS DB by Protein ID:ENSP00000372056
Original member Current member NCBI NM_001134222.2 NP_001127694.1 Accepted alive Link to Nucleotide Sequence:NM_001134222.2Link to Protein Sequence:NP_001127694.1Re-query CCDS DB by Nucleotide ID:NM_001134222Re-query CCDS DB by Protein ID:NP_001127694Link to BLAST:NP_001127694.1
Original member Current member NCBI NM_033267.5 NP_150366.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033267.5Link to Protein Sequence:NP_150366.1Re-query CCDS DB by Nucleotide ID:NM_033267Re-query CCDS DB by Protein ID:NP_150366Link to BLAST:NP_150366.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127694.1 471 Q9BZI1 471 100% 0 0
NP_150366.1 471 Q9BZI1 471 100% 0 0

Chromosomal Locations for CCDS 3868.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 2747564 2747616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 2748345 2749052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 2749382 2749787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 2751165 2751413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGTCCTACCCGCAGGGCTACCTGTACCAGGCGCCCGGCTCGCTGGCGCTCTACTCGTGCCCGGCCTACG
GC
GCGTCGGCTTTGGCGGCTCCGCGCAGCGAGGAGCTGGCGCGCTCGGCGTCGGGCTCGGCGTTCAGCCC
C
TACCCGGGCTCGGCGGCCTTCACGGCGCAGGCGGCCACCGGCTTCGGGAGCCCGCTGCAGTACTCGGCC
GAC
GCCGCCGCCGCCGCCGCCGGCTTCCCGTCCTACATGGGCGCACCCTACGACGCGCACACCACCGGCA
TG
ACCGGCGCCATCAGCTACCACCCGTACGGCAGCGCGGCCTACCCGTACCAGCTCAACGACCCCGCGTA
C
CGCAAGAACGCCACGCGGGACGCCACGGCCACTCTCAAGGCCTGGCTCAACGAGCACCGCAAGAACCCC
TAC
CCCACCAAGGGCGAGAAGATCATGCTAGCCATCATCACCAAGATGACCCTCACCCAGGTCTCCACCT
GG
TTCGCCAACGCGCGCCGGCGCCTCAAGAAGGAGAACAAGATGACCTGGGCCCCGAGAAACAAAAGCGA
A
GATGAGGACGAGGACGAGGGCGACGCTACCAGAAGCAAGGACGAGAGTCCCGACAAGGCGCAGGAGGGC
ACG
GAGACCTCGGCAGAGGACGAAGGGATCAGCCTGCACGTGGACTCGCTCACGGATCACTCGTGCTCGG
CC
GAGTCGGACGGGGAGAAGCTTCCGTGCCGCGCCGGGGACCCCCTGTGCGAATCGGGCTCGGAGTGCAA
G
GACAAGTATGACGACCTGGAGGACGACGAGGACGACGACGAGGAGGGCGAGCGGGGCCTGGCGCCGCCC
AAG
CCCGTGACCTCGTCGCCGCTTACCGGCTTGGAGGCGCCGCTGCTGAGCCCCCCGCCCGAGGCCGCGC
CC
CGCGGTGGCCGCAAGACGCCCCAGGGCAGCCGGACGTCTCCGGGCGCGCCGCCCCCCGCCAGCAAGCC
C
AAGCTGTGGTCGCTGGCCGAGATCGCCACGTCGGACCTCAAGCAGCCGAGCCTGGGCCCGGGCTGCGGG
CCA
CCGGGGCTGCCCGCGGCCGCCGCGCCGGCCTCAACCGGGGCACCGCCAGGAGGCTCGCCCTACCCTG
CC
TCGCCGCTGCTGGGCCGCCCCCTCTACTACACGTCGCCCTTCTACGGCAACTACACAAACTACGGGAA
C
TTGAACGCGGCGCTGCAGGGCCAGGGTCTCCTGCGGTACAACTCTGCGGCCGCGGCCCCCGGCGAGGCC
CTG
CACACCGCGCCAAAGGCGGCCAGCGACGCGGGCAAGGCGGGCGCGCACCCGCTCGAGTCCCACTACC
GG
TCCCCGGGCGGCGGCTACGAGCCCAAGAAAGATGCCAGCGAGGGCTGCACCGTGGTTGGCGGGGGCGT
C
CAGCCCTACCTATAG


Translation (471 aa):
MSYPQGYLYQAPGSLALYSCPAYGASALAAPRSEELARSASGSAFSPYPGSAAFTAQAATGFGSPLQYSA
D
AAAAAAGFPSYM
GAPYDAHTTGMTGAISYHPYGSAAYPYQLNDPAYRKNATRDATATLKAWLNEHRKNP
Y
PTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWAPRNKSEDEDEDEGDATRSKDESPDKAQEG
T
ETSAEDE
GISLHVDSLTDHSCSAESDGEKLPCRAGDPLCESGSECKDKYDDLEDDEDDDEEGERGLAPP
K
PVTSSPLTGLEAPLLSPPPEAAPRGGRKTPQGSRTSPGAPPPASKPKLWSLAEIATSDLKQPSLGPGCG
P
PGLPAAAAPASTGAPPGGSPYPASPLLGRPLYYTSPFYGNYTNYGNLNAALQGQGLLRYNSAAAAPGEA
L
HTAPKAASDAGKAGAHPLESHYRSPGGGYEPKK
DASEGCTVVGGGVQPYL



Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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