NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2782.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2782.3 Public Homo sapiens 3 WDR6 24 110 108 CCDS HistoryNCBI Gene:11180Re-query CCDS DB by CCDS ID:2782.3Re-query CCDS DB by GeneID:11180See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 2782.2
The coding region has been updated to shorten the N-terminus, using a start codon that is better supported by conservation data, ribosome profiling, and peptide data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2782.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000608424.6 ENSP00000477389.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000608424.6Link to Ensembl Protein Viewer:ENSP00000477389.1Re-query CCDS DB by Nucleotide ID:ENST00000608424Re-query CCDS DB by Protein ID:ENSP00000477389
Original member Current member NCBI NM_018031.6 NP_060501.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018031.6Link to Protein Sequence:NP_060501.4Re-query CCDS DB by Nucleotide ID:NM_018031Re-query CCDS DB by Protein ID:NP_060501Link to BLAST:NP_060501.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060501.4 1121 Q9NNW5 1121 100% 0 0

Chromosomal Locations for CCDS 2782.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 49007432 49007531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49011635 49014116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49014210 49014293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49014383 49014499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49014600 49014718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49014825 49015288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3366 nt):
ATGGACGCTCTCGAGGACTACGTTTGGCCGCGGGCAACCTCGGAGCTTATACTCCTCCCAGTGACGGGTC
TGGAGTGCGTGGGGGACCGGCTGTTGGCGGGTGAGGGTCCCGATGTCCTGGTGTACAGCTTGGACTTTGG
TGGGCATCTGCGGATGATAAAGCGAGTGCAGAACCTGCTTGGCCACTATCTTATCCATGGCTTCCGGGTA
CGGCCAGAGCCTAATGGAGACCTTGACTTGGAGGCCATGGTGGCTGTGTTTGGAAGCAAGGGACTCCGAG
TTGTGAAAATTAGCTGGGGACAGGGCCACTTCTGGGAGCTTTGGCGCTCTGGCCTGTGGAACATGTCTGA
CTGGATTTGGGATGCACGCTGGCTTGAGGGAAATATAGCCTTGGCCCTGGGCCACAACTCAGTGGTGCTA
TATGACCCTGTAGTAGGGTGCATCCTGCAAGAGGTGCCCTGCACAGACAGGTGCACCCTCTCTTCAGCCT
GCCTGATTGGAGACGCCTGGAAGGAGCTGACCATAGTGGCAGGTGCTGTTTCCAACCAGCTCTTGGTCTG
GTACCCAGCAACTGCCTTAGCAGACAACAAACCTGTAGCACCTGACCGACGAATCAGTGGGCATGTGGGC
ATCATCTTCAGCATGTCATACCTGGAAAGCAAGGGATTGCTGGCTACAGCTTCAGAAGACCGAAGCGTTC
GTATCTGGAAGGTGGGCGACCTGCGAGTGCCTGGGGGTCGGGTGCAGAATATTGGGCACTGCTTTGGGCA
CAGCGCCCGTGTGTGGCAGGTCAAGCTTCTAGAGAATTACCTTATCAGTGCAGGAGAGGATTGTGTCTGC
TTGGTGTGGAGCCATGAAGGTGAGATCCTCCAGGCCTTTCGGGGACACCAGGGACGTGGGATCCGGGCCA
TAGCTGCCCATGAGAGGCAGGCCTGGGTGATCACTGGGGGTGATGACTCAGGCATTCGGCTGTGGCACTT
GGTAGGGCGTGGGTACCGGGGATTGGGGGTCTCGGCTCTCTGCTTCAAGTCCCGTAGTAGGCCAGGTACA
CTCAAGGCTGTGACTCTGGCTGGCTCTTGGCGACTGCTGGCAGTGACTGATACAGGGGCCCTGTATCTCT
ATGACGTCGAGGTCAAGTGCTGGGAGCAGCTGCTAGAGGATAAACATTTCCAGTCCTACTGCCTGCTGGA
GGCAGCTCCTGGTCCCGAGGGCTTCGGATTGTGTGCTATGGCCAATGGGGAAGGTCGTGTCAAGGTTGTC
CCCATCAACACTCCAACTGCTGCTGTGGACCAGACCCTGTTTCCTGGGAAGGTGCACAGCTTGAGCTGGG
CCCTGCGTGGTTATGAGGAGCTCCTGTTGCTGGCATCGGGCCCTGGCGGGGTAGTAGCTTGCCTAGAGAT
CTCAGCCGCACCCTCTGGCAAGGCCATCTTTGTCAAGGAACGTTGTCGGTACCTGCTGCCCCCAAGCAAG
CAGAGATGGCACACATGCAGTGCCTTCCTACCCCCAGGTGACTTCCTGGTGTGTGGTGACCGCCGGGGCT
CTGTGCTGCTATTCCCCTCCAGACCAGGTCTGCTCAAGGACCCTGGGGTGGGAGGCAAGGCTCGGGCTGG
TGCTGGGGCACCTGTAGTGGGTAGTGGTAGTAGTGGGGGTGGGAATGCTTTCACTGGGTTGGGCCCAGTG
TCTACCCTGCCCTCTCTGCACGGGAAGCAGGGTGTGACCTCAGTCACATGCCATGGTGGCTATGTGTATA
CCACAGGGCGTGATGGAGCCTACTACCAGCTGTTTGTACGAGACGGCCAGCTCCAGCCAGTCCTAAGGCA
GAAGTCCTGTCGAGGCATGAACTGGCTAGCTGGGCTCCGTATAGTGCCCGATGGGAGCATGGTTATCCTG
GGTTTCCATGCCAATGAGTTTGTGGTGTGGAACCCTCGGTCACACGAGAAGCTGCACATCGTCAACTGTG
GTGGAGGGCACCGTTCGTGGGCATTCTCTGATACTGAGGCGGCCATGGCCTTTGCTTACCTCAAGGATGG
GGATGTCATGCTGTACAGGGCTCTGGGTGGCTGCACCCGGCCACACGTGATTCTCCGGGAGGGTCTGCAT
GGCCGTGAGATCACTTGTGTAAAGCGTGTGGGCACCATTACCCTGGGGCCTGAATATGGAGTGCCCAGCT
TCATGCAGCCTGATGACCTGGAGCCTGGCAGTGAGGGGCCCGACTTGACTGACATTGTGATCACATGTAG
TGAGGACACTACTGTCTGTGTCCTAGCACTCCCTACAACCACAGGCTCAGCCCACGCACTCACAGCTGTT
TGTAACCATATCTCCTCGGTACGTGCTGTGGCTGTGTGGGGCATTGGCACCCCAGGTGGCCCTCAGGATC
CTCAGCCAGGCCTGACTGCCCATGTGGTGTCTGCGGGGGGGCGGGCTGAGATGCACTGCTTCAGCATCAT
GGTTACTCCGGACCCCAGCACCCCAAGCCGCCTCGCCTGCCATGTCATGCACCTTTCGTCCCACCGGCTA
GATGAGTATTGGGACCGGCAACGCAATCGGCATCGGATGGTTAAGGTAGACCCAGAGACCAGGTACATGT
CCCTTGCTGTGTGTGAACTTGACCAGCCCGGCCTTGGCCCCCTTGTGGCTGCAGCCTGTAGTGATGGGGC
CGTAAGGCTCTTTCTTTTGCAGGATTCTGGGCGGATTCTGCAGCTCCTTGCTGAAACCTTCCACCATAAG
CGATGTGTCCTCAAGGTCCACTCCTTTACACACGAGGCACCCAACCAGAGGCGGAGGCTCCTCCTGTGCA
GCGCAGCTACTGATGGCAGCCTGGCTTTCTGGGATCTCACCACCATGCTAGACCATGACTCCACTGTCCT
GGAGCCTCCAGTGGATCCTGGGCTTCCCTACCGGCTTGGCACCCCCTCCCTGACTCTCCAGGCCCACAGC
TGTGGTATCAACAGCCTGCACACCTTGCCCACCCGTGAGGGCCACCATCTCGTGGCCAGTGGCAGTGAAG
ATGGATCCCTCCATGTCTTCGTGCTTGCTGTGGAGATGCTACAGCTAGAAGAGGCTGTGGGAGAGGCTGG
GCTGGTACCCCAGCTGCGTGTGCTAGAGGAATACTCTGTCCCCTGTGCACATGCTGCCCATGTGACAGGC
CTCAAGATCCTAAGCCCAAGCATCATGGTCTCAGCCTCCATTGATCAACGGCTGACCTTCTGGCGTCTGG
GGCATGGTGAACCCACCTTCATGAATAGCACTGTGTTCCATGTGCCTGATGTGGCTGACATGGACTGCTG
GCCTGTGAGCCCTGAGTTTGGCCACCGTTGTGCCCTTGGGGGTCAGGGGCTTGAGGTTTACAACTGGTAT
GACTGA

Translation (1121 aa):
MDALEDYVWPRATSELILLPVTGLECVGDRLLAGEGPDVLVYSLDFGGHLRMIKRVQNLLGHYLIHGFRV
RPEPNGDLDLEAMVAVFGSKGLRVVKISWGQGHFWELWRSGLWNMSDWIWDARWLEGNIALALGHNSVVL
YDPVVGCILQEVPCTDRCTLSSACLIGDAWKELTIVAGAVSNQLLVWYPATALADNKPVAPDRRISGHVG
IIFSMSYLESKGLLATASEDRSVRIWKVGDLRVPGGRVQNIGHCFGHSARVWQVKLLENYLISAGEDCVC
LVWSHEGEILQAFRGHQGRGIRAIAAHERQAWVITGGDDSGIRLWHLVGRGYRGLGVSALCFKSRSRPGT
LKAVTLAGSWRLLAVTDTGALYLYDVEVKCWEQLLEDKHFQSYCLLEAAPGPEGFGLCAMANGEGRVKVV
PINTPTAAVDQTLFPGKVHSLSWALRGYEELLLLASGPGGVVACLEISAAPSGKAIFVKERCRYLLPPSK
QRWHTCSAFLPPGDFLVCGDRRGSVLLFPSRPGLLKDPGVGGKARAGAGAPVVGSGSSGGGNAFTGLGPV
STLPSLHGKQGVTSVTCHGGYVYTTGRDGAYYQLFVRDGQLQPVLRQKSCRGMNWLAGLRIVPDGSMVIL
GFHANEFVVWNPRSHEKLHIVNCGGGHRSWAFSDTEAAMAFAYLKDGDVMLYRALGGCTRPHVILREGLH
GREITCVKRVGTITLGPEYGVPSFMQPDDLEPGSEGPDLTDIVITCSEDTTVCVLALPTTTGSAHALTAV
CNHISSVRAVAVWGIGTPGGPQDPQPGLTAHVVSAGGRAEMHCFSIMVTPDPSTPSRLACHVMHLSSHRL
DEYWDRQRNRHRMVKVDPETRYMSLAVCELDQPGLGPLVAAACSDGAVRLFLLQDSGRILQLLAETFHHK
RCVLKVHSFTHEAPNQRRRLLLCSAATDGSLAFWDLTTMLDHDSTVLEPPVDPGLPYRLGTPSLTLQAHS
CGINSLHTLPTREGHHLVASGSEDGSLHVFVLAVEMLQLEEAVGEAGLVPQLRVLEEYSVPCAHAAHVTG
LKILSPSIMVSASIDQRLTFWRLGHGEPTFMNSTVFHVPDVADMDCWPVSPEFGHRCALGGQGLEVYNWY
D


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH