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Report for CCDS45900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45900.1 Public Homo sapiens 19 ONECUT3 24 110 108 CCDS HistoryNCBI Gene:390874Re-query CCDS DB by CCDS ID:45900.1Re-query CCDS DB by GeneID:390874See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45900.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382349.5 ENSP00000371786.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382349.5Link to Ensembl Protein Viewer:ENSP00000371786.4Re-query CCDS DB by Nucleotide ID:ENST00000382349Re-query CCDS DB by Protein ID:ENSP00000371786
Original member Current member NCBI NM_001080488.2 NP_001073957.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080488.2Link to Protein Sequence:NP_001073957.1Re-query CCDS DB by Nucleotide ID:NM_001080488Re-query CCDS DB by Protein ID:NP_001073957Link to BLAST:NP_001073957.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073957.1 494 O60422 494 100% 0 0

Chromosomal Locations for CCDS 45900.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 1753663 1754854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1775153 1775445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGGAGCTGAGCCTGGAGAGCCTGGGGGGCCTGCACAGCGTGGCCCACGCGCAGGCGGGCGAGCTGCTGA
GC
CCGGGCCACGCGCGCTCGGCGGCGGCGCAGCACCGCGGCCTGGTGGCGCCCGGGCGCCCGGGCCTGGT
G
GCCGGCATGGCGAGCCTGCTGGACGGCGGCGGCGGCGGCGGCGGTGGGGGCGCCGGGGGCGCGGGCGGC
GCG
GGCAGCGCGGGCGGCGGCGCGGACTTCCGCGGGGAACTGGCGGGCCCGCTGCACCCGGCAATGGGCA
TG
GCCTGCGAGGCGCCGGGCCTGGGCGGCACCTACACGACGCTCACGCCCCTGCAGCACCTGCCGCCGCT
C
GCGGCCGTGGCCGACAAGTTCCACCAGCACGCGGCGGCCGCGGCCGTGGCCGGGGCGCACGGCGGCCAT
CCC
CACGCGCACCCGCACCCGGCGGCCGCGCCGCCCCCGCCACCCCCGCCGCAGCGTCTGGCGGCCAGCG
TG
AGCGGCAGCTTCACCCTCATGCGCGACGAGCGGGCGGCGCTCGCCTCCGTGGGCCACCTCTACGGACC
C
TACGGCAAGGAGCTGCCCGCCATGGGGTCGCCGCTGTCGCCGCTGCCCAACGCGCTGCCGCCCGCGCTG
CAC
GGCGCCCCGCAGCCCCCGCCGCCGCCACCACCCCCGCCGCTGGCCGCCTACGGCCCGCCAGGCCACC
TG
GCTGGGGACAAGCTGCTGCCGCCCGCCGCCTTCGAGCCGCACGCCGCGCTGCTGGGACGCGCGGAGGA
C
GCACTGGCCCGCGGGCTGCCCGGAGGCGGCGGCGGCACAGGCAGCGGCGGAGCGGGCAGCGGGAGCGCC
GCG
GGGCTGCTGGCGCCGCTGGGCGGGCTGGCGGCGGCCGGGGCGCACGGGCCGCACGGGGGAGGCGGCG
GC
CCCGGCGGGAGCGGCGGCGGCCCCAGCGCGGGCGCAGCGGCCGAGGAGATCAACACCAAGGAGGTGGC
G
CAGCGCATCACGGCGGAGCTGAAGCGCTACAGCATCCCGCAGGCAATCTTCGCGCAGCGGATCCTGTGT
CGC
TCTCAGGGCACGCTCTCCGACCTGCTGCGCAACCCCAAGCCGTGGAGCAAGCTCAAATCCGGCCGCG
AG
ACCTTCCGCAGGATGTGGAAGTGGCTGCAGGAGCCAGAGTTCCAGCGCATGTCGGCGCTGCGCTTGGC
A
GCCTGCAAGCGCAAGGAACAGGAGCAGCAGAAGGAGCGCGCCCTGCAGCCCAAGAAGCAGCGCCTGGTG
TTC
ACCGACCTGCAGCGACGCACGCTGATCGCCATCTTCAAGGAGAACAAGCGGCCGTCCAAGGAGATGC
AG
GTCACCATCTCGCAGCAGCTCGGCTTGGAGCTCAACACCGTCAGCAACTTCTTCATGAACGCGCGGCG
C
CGCTGCATGAACCGCTGGGCTGAGGAGCCCAGCACGGCCCCCGGGGGCCCCGCCGGCGCCACGGCCACT
TTC
TCCAAGGCCTGA


Translation (494 aa):
MELSLESLGGLHSVAHAQAGELLSPGHARSAAAQHRGLVAPGRPGLVAGMASLLDGGGGGGGGGAGGAGG
A
GSAGGGADFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGH
P
HAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPAL
H
GAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGTGSGGAGSGSA
A
GLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAEEINTKEVAQRITAELKRYSIPQAIFAQRILC
R
SQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLA
ACKRKEQEQQKERALQPKKQRLV
F
TDLQRRTLIAIFKENKRPSKEMQVTISQQLGLELNTVSNFFMNARRRCMNRWAEEPSTAPGGPAGATAT
F
SKA




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 Genome Browser Links:   Ensembl Genome Browser
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