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Report for CCDS90892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90892.1 Public Homo sapiens 1 PIGV 24 110 108 CCDS HistoryNCBI Gene:55650Re-query CCDS DB by CCDS ID:90892.1Re-query CCDS DB by GeneID:55650See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90892.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000686194.1 ENSP00000509240.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686194.1Link to Ensembl Protein Viewer:ENSP00000509240.1Re-query CCDS DB by Nucleotide ID:ENST00000686194Re-query CCDS DB by Protein ID:ENSP00000509240
Original member Current member NCBI NM_001374484.1 NP_001361413.1 Accepted alive Link to Nucleotide Sequence:NM_001374484.1Link to Protein Sequence:NP_001361413.1Re-query CCDS DB by Nucleotide ID:NM_001374484Re-query CCDS DB by Protein ID:NP_001361413Link to BLAST:NP_001361413.1
Original member Current member NCBI NM_001374485.1 NP_001361414.1 Accepted alive Link to Nucleotide Sequence:NM_001374485.1Link to Protein Sequence:NP_001361414.1Re-query CCDS DB by Nucleotide ID:NM_001374485Re-query CCDS DB by Protein ID:NP_001361414Link to BLAST:NP_001361414.1

Chromosomal Locations for CCDS 90892.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26790816 26790893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26794113 26794206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26794834 26795234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26797563 26797844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGTGGCCCCAGGACCCATCCCGGAAGGAGGTGCTGAGGTTTGCAGTCAGCTGCCGTATCCTGACTCTGA
TGCTGCAGGCCCTCTTCAATGCCATCATCCCAGATCACCATGCAGAAGCCTTCTCTCCTCCTCGCCTGGC
CCCCTCAGGCTTTGTGGACCAACTCGTGGAAGGCTCAGCCCGCCCCATTCCTGAGCCTTTGGTACAGTTA
GCTGTAGACAAGGGCTACCGGATTGCAGAGGGAAATGAACCGCCTTGGTGCTTCTGGGATGTTCCACTAA
TATACAGCTATATCCAGGATGTCTACTGGAATGTTGGCTTTTTGAAATACTATGAGCTCAAGCAGGTGCC
CAATTTTCTACTGGCTGCACCAGTGGCTATACTGGTTGCCTGGGCAACTTGGACATACGTGACCACTCAC
CCTTGGCTCTGCCTTACACTTGGGCTGCAAAGGAGCAAGAACAATAAGACCCTAGAGAAGCCCGATCTTG
GATTCCTCAGTCCTCAGGTGTTTGTGTACGTGGTCCACGCTGCAGTGCTGCTGCTGTTTGGAGGTCTGTG
CATGCATGTTCAGGTTCTCACCAGGTTTTTGGGCTCCTCCACTCCTATTATGTACTGGTTTCCAGCTCAC
TTGCTTCAGGATCAAGAGCCGCTGTTGAGATCCTTAAAGACTGTGCCTTGGAAGCCTCTTGCAGAGGACT
CCCCACCAGGACAAAAGGTCCCCAGAAATCCTATCATGGGACTTTTGTATCACTGGAAAACCTGTTCTCC
AGTCACACGATACATTCTAGGCTACTTCCTGACTTACTGGCTCCTGGGACTACTCCTACATTGCAACTTC
CTGCCTTGGACATGA

Translation (284 aa):
MWPQDPSRKEVLRFAVSCRILTLMLQALFNAIIPDHHAEAFSPPRLAPSGFVDQLVEGSARPIPEPLVQL
AVDKGYRIAEGNEPPWCFWDVPLIYSYIQDVYWNVGFLKYYELKQVPNFLLAAPVAILVAWATWTYVTTH
PWLCLTLGLQRSKNNKTLEKPDLGFLSPQVFVYVVHAAVLLLFGGLCMHVQVLTRFLGSSTPIMYWFPAH
LLQDQEPLLRSLKTVPWKPLAEDSPPGQKVPRNPIMGLLYHWKTCSPVTRYILGYFLTYWLLGLLLHCNF
LPWT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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