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Sample GSM1675456 Query DataSets for GSM1675456
Status Public on May 06, 2015
Title becic-00235: PD010: HG_U95C
Sample type RNA
 
Source name D010_normal_prostate
Organism Homo sapiens
Characteristics Sex: male
age: 46
diseasestate: Normal
tumorgrading: --
diseasestaging: --
organismpart: Prostate
histology: at least 60% glandular no pathological alterations
prostatetissue: normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 61.7123 A 0.868639
AFFX-MurIL10_at 18.8777 A 0.883887
AFFX-MurIL4_at 22.4522 A 0.804734
AFFX-MurFAS_at 28.5988 A 0.724854
AFFX-BioB-5_at 653.184 P 0.0219019
AFFX-BioB-M_at 1831.08 P 0.00110197
AFFX-BioB-3_at 1048.83 P 0.00556451
AFFX-BioC-5_at 2452.16 P 0.000389797
AFFX-BioC-3_at 2542.31 P 4.42873e-05
AFFX-BioDn-5_at 2472.98 P 7.00668e-05
AFFX-BioDn-3_at 17006.2 P 7.00668e-05
AFFX-CreX-5_at 29757 P 4.42873e-05
AFFX-CreX-3_at 45816.7 P 4.42873e-05
AFFX-BioB-5_st 51.3564 A 0.645559
AFFX-BioB-M_st 198.18 A 0.382599
AFFX-BioB-3_st 47.7487 A 0.953518
AFFX-BioC-5_st 48.9717 A 0.824672
AFFX-BioC-3_st 25.2823 A 0.794268
AFFX-BioDn-5_st 363.369 A 0.156732
AFFX-BioDn-3_st 455.348 A 0.0894781

Total number of rows: 12646

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675456_PD010_u95c.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675456_PD010_u95cmas5.CHP.gz 4.3 Mb (ftp)(http) CHP
GSM1675456_PD010_u95cmas5.CHP.txt.gz 129.6 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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