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Sample GSM1675438 Query DataSets for GSM1675438
Status Public on May 06, 2015
Title becic-00235: PD004: HG_U95C
Sample type RNA
 
Source name D004_normal_prostate
Organism Homo sapiens
Characteristics Sex: male
age: 19
diseasestate: Normal
tumorgrading: --
diseasestaging: --
organismpart: Prostate
histology: at least 60% glandular no pathological alterations
prostatetissue: normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 88.593 A 0.824672
AFFX-MurIL10_at 32.3276 A 0.843268
AFFX-MurIL4_at 10.0135 A 0.99156
AFFX-MurFAS_at 173.831 A 0.382599
AFFX-BioB-5_at 1631.68 P 0.00227496
AFFX-BioB-M_at 4044.68 P 0.000169227
AFFX-BioB-3_at 1513.69 P 0.000509415
AFFX-BioC-5_at 5491.68 P 6.02111e-05
AFFX-BioC-3_at 4139.73 P 4.42873e-05
AFFX-BioDn-5_at 4027.37 P 5.16732e-05
AFFX-BioDn-3_at 24631.1 P 5.16732e-05
AFFX-CreX-5_at 45208.7 P 4.42873e-05
AFFX-CreX-3_at 68461.4 P 4.42873e-05
AFFX-BioB-5_st 105.001 A 0.574038
AFFX-BioB-M_st 79.9726 A 0.794268
AFFX-BioB-3_st 77.7467 A 0.904333
AFFX-BioC-5_st 89.2568 A 0.843268
AFFX-BioC-3_st 90.9047 A 0.631562
AFFX-BioDn-5_st 270.169 A 0.262827
AFFX-BioDn-3_st 514.529 A 0.239063

Total number of rows: 12646

Table truncated, full table size 350 Kbytes.




Supplementary file Size Download File type/resource
GSM1675438_PD004_u95c.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675438_PD004_u95cmas5.CHP.gz 4.3 Mb (ftp)(http) CHP
GSM1675438_PD004_u95cmas5.CHP.txt.gz 130.2 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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