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Sample GSM1675432 Query DataSets for GSM1675432
Status Public on May 06, 2015
Title becic-00235: PD002: HG_U95C
Sample type RNA
 
Source name D002_normal_prostate
Organism Homo sapiens
Characteristics Sex: male
age: 41
diseasestate: Normal
tumorgrading: --
diseasestaging: --
organismpart: Prostate
histology: at least 60% glandular no pathological alterations
prostatetissue: normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 40.7682 A 0.891021
AFFX-MurIL10_at 40.2578 A 0.824672
AFFX-MurIL4_at 53.3937 A 0.83416
AFFX-MurFAS_at 116.63 A 0.544587
AFFX-BioB-5_at 1730.85 P 0.00159257
AFFX-BioB-M_at 3284.56 P 0.000146581
AFFX-BioB-3_at 1710 P 0.00179591
AFFX-BioC-5_at 5237.5 P 9.4506e-05
AFFX-BioC-3_at 3908.99 P 8.14279e-05
AFFX-BioDn-5_at 3768.55 P 6.02111e-05
AFFX-BioDn-3_at 19373.4 P 5.16732e-05
AFFX-CreX-5_at 45985.3 P 4.42873e-05
AFFX-CreX-3_at 73762.2 P 4.42873e-05
AFFX-BioB-5_st 59.7803 A 0.631562
AFFX-BioB-M_st 387.32 A 0.41138
AFFX-BioB-3_st 67.0541 A 0.749223
AFFX-BioC-5_st 184.677 A 0.544587
AFFX-BioC-3_st 120.971 A 0.631562
AFFX-BioDn-5_st 202.919 A 0.275146
AFFX-BioDn-3_st 387.813 A 0.123572

Total number of rows: 12646

Table truncated, full table size 350 Kbytes.




Supplementary file Size Download File type/resource
GSM1675432_PD002_u95c.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675432_PD002_u95cmas5.CHP.gz 4.1 Mb (ftp)(http) CHP
GSM1675432_PD002_u95cmas5.CHP.txt.gz 130.6 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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