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Sample GSM1675396 Query DataSets for GSM1675396
Status Public on May 06, 2015
Title becic-00235: PT87: HG_U95C
Sample type RNA
 
Source name P87_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_8
diseasestaging: pT T2b, pN NX, pM MX
organismpart: Prostate
histology: ALI unknown, ECI no, SVI no, SMI unknown
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 32.1365 A 0.932322
AFFX-MurIL10_at 26.3045 A 0.804734
AFFX-MurIL4_at 8.78936 A 0.957038
AFFX-MurFAS_at 42.3579 A 0.659339
AFFX-BioB-5_at 3406.34 P 0.000445901
AFFX-BioB-M_at 6990.29 P 4.42873e-05
AFFX-BioB-3_at 2393 P 8.14279e-05
AFFX-BioC-5_at 8687.42 P 5.16732e-05
AFFX-BioC-3_at 8276.34 P 5.16732e-05
AFFX-BioDn-5_at 7502.14 P 4.42873e-05
AFFX-BioDn-3_at 33308.9 P 4.42873e-05
AFFX-CreX-5_at 59582 P 4.42873e-05
AFFX-CreX-3_at 94693.3 P 4.42873e-05
AFFX-BioB-5_st 43.2038 A 0.617401
AFFX-BioB-M_st 259.938 A 0.41138
AFFX-BioB-3_st 51.794 A 0.904333
AFFX-BioC-5_st 57.4305 A 0.916408
AFFX-BioC-3_st 51.7504 A 0.574038
AFFX-BioDn-5_st 475.68 A 0.156732
AFFX-BioDn-3_st 456.033 M 0.0429619

Total number of rows: 12646

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675396_PT87_u95c.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675396_PT87_u95cmas5.CHP.gz 4.3 Mb (ftp)(http) CHP
GSM1675396_PT87_u95cmas5.CHP.txt.gz 129.5 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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