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Sample GSM1675384 Query DataSets for GSM1675384
Status Public on May 06, 2015
Title becic-00235: PT83: HG_U95C
Sample type RNA
 
Source name P83_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T2b, pN N0, pM MX
organismpart: Prostate
histology: ALI no, ECI no, SVI no, SMI no
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 38.9404 A 0.916408
AFFX-MurIL10_at 169.233 A 0.51489
AFFX-MurIL4_at 108.583 A 0.327079
AFFX-MurFAS_at 140.901 A 0.440646
AFFX-BioB-5_at 2919.64 P 0.000753643
AFFX-BioB-M_at 4741.86 P 4.42873e-05
AFFX-BioB-3_at 2433.88 P 7.00668e-05
AFFX-BioC-5_at 8062.39 P 6.02111e-05
AFFX-BioC-3_at 7074.53 P 5.16732e-05
AFFX-BioDn-5_at 6922.78 P 4.42873e-05
AFFX-BioDn-3_at 33051.6 P 5.16732e-05
AFFX-CreX-5_at 68791.8 P 4.42873e-05
AFFX-CreX-3_at 107663 P 4.42873e-05
AFFX-BioB-5_st 192.317 A 0.313723
AFFX-BioB-M_st 196.618 A 0.559354
AFFX-BioB-3_st 69.6436 A 0.843268
AFFX-BioC-5_st 30.9122 A 0.876428
AFFX-BioC-3_st 18.3779 A 0.699394
AFFX-BioDn-5_st 216.289 A 0.327079
AFFX-BioDn-3_st 462.268 A 0.0956669

Total number of rows: 12646

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675384_PT83_u95c.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675384_PT83_u95cmas5.CHP.gz 4.3 Mb (ftp)(http) CHP
GSM1675384_PT83_u95cmas5.CHP.txt.gz 129.0 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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