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Sample GSM1675378 Query DataSets for GSM1675378
Status Public on May 06, 2015
Title becic-00235: PT81: HG_U95C
Sample type RNA
 
Source name P81_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_9
diseasestaging: pT T4, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI yes, SVI yes, SMI yes
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 102.641 A 0.58862
AFFX-MurIL10_at 145.71 A 0.559354
AFFX-MurIL4_at 42.5057 A 0.737173
AFFX-MurFAS_at 90.7969 A 0.559364
AFFX-BioB-5_at 2729.13 P 0.000389797
AFFX-BioB-M_at 5267.26 P 5.16732e-05
AFFX-BioB-3_at 2219.35 P 0.000296708
AFFX-BioC-5_at 7005.15 P 6.02111e-05
AFFX-BioC-3_at 6649.18 P 4.42873e-05
AFFX-BioDn-5_at 5085.85 P 4.42873e-05
AFFX-BioDn-3_at 31185.8 P 4.42873e-05
AFFX-CreX-5_at 63871.2 P 4.42873e-05
AFFX-CreX-3_at 100290 P 4.42873e-05
AFFX-BioB-5_st 86.477 A 0.41138
AFFX-BioB-M_st 158.304 A 0.5
AFFX-BioB-3_st 96.1122 A 0.760956
AFFX-BioC-5_st 23.8086 A 0.843268
AFFX-BioC-3_st 38.1603 A 0.645547
AFFX-BioDn-5_st 50.5912 A 0.313723
AFFX-BioDn-3_st 379.226 A 0.175328

Total number of rows: 12646

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675378_PT81_u95c.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675378_PT81_u95cmas5.CHP.gz 4.3 Mb (ftp)(http) CHP
GSM1675378_PT81_u95cmas5.CHP.txt.gz 129.4 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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