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Sample GSM1675369 Query DataSets for GSM1675369
Status Public on May 06, 2015
Title becic-00235: PT75: HG_U95C
Sample type RNA
 
Source name P75_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_6
diseasestaging: pT T2b, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI no, SVI no, SMI no
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 44.0587 A 0.852061
AFFX-MurIL10_at 54.6324 A 0.617401
AFFX-MurIL4_at 94.5036 A 0.368438
AFFX-MurFAS_at 29.6268 A 0.824672
AFFX-BioB-5_at 1442.58 P 0.00687065
AFFX-BioB-M_at 2284.12 P 0.000662269
AFFX-BioB-3_at 991.466 P 0.0012475
AFFX-BioC-5_at 3778.54 P 0.000169227
AFFX-BioC-3_at 3169.85 P 5.16732e-05
AFFX-BioDn-5_at 3145.71 P 7.00668e-05
AFFX-BioDn-3_at 19068.2 P 7.00668e-05
AFFX-CreX-5_at 29914.2 P 4.42873e-05
AFFX-CreX-3_at 52514.8 P 4.42873e-05
AFFX-BioB-5_st 302.734 A 0.0894781
AFFX-BioB-M_st 144.68 A 0.659339
AFFX-BioB-3_st 85.4083 A 0.834139
AFFX-BioC-5_st 52.9908 A 0.824672
AFFX-BioC-3_st 18.1544 A 0.672921
AFFX-BioDn-5_st 322.921 A 0.275146
AFFX-BioDn-3_st 371.722 M 0.0429619

Total number of rows: 12646

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675369_PT75_u95c.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675369_PT75_u95cmas5.CHP.gz 4.5 Mb (ftp)(http) CHP
GSM1675369_PT75_u95cmas5.CHP.txt.gz 128.8 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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