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Sample GSM1675357 Query DataSets for GSM1675357
Status Public on May 06, 2015
Title becic-00235: PT71: HG_U95C
Sample type RNA
 
Source name P71_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI focal, SVI no, SMI no
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 32.9722 A 0.794268
AFFX-MurIL10_at 117.98 A 0.470241
AFFX-MurIL4_at 23.1734 A 0.617411
AFFX-MurFAS_at 32.0151 A 0.672921
AFFX-BioB-5_at 1580.91 P 0.00255552
AFFX-BioB-M_at 3989.47 P 9.4506e-05
AFFX-BioB-3_at 1811.67 P 0.000340305
AFFX-BioC-5_at 4338.83 P 8.14279e-05
AFFX-BioC-3_at 3906.8 P 5.16732e-05
AFFX-BioDn-5_at 3739.34 P 4.42873e-05
AFFX-BioDn-3_at 18424.6 P 5.16732e-05
AFFX-CreX-5_at 36505.1 P 4.42873e-05
AFFX-CreX-3_at 59827.2 P 8.14279e-05
AFFX-BioB-5_st 182.25 A 0.275146
AFFX-BioB-M_st 108.059 A 0.58862
AFFX-BioB-3_st 48.4956 A 0.824672
AFFX-BioC-5_st 49.3068 A 0.804734
AFFX-BioC-3_st 11.0531 A 0.686277
AFFX-BioDn-5_st 351.079 A 0.165861
AFFX-BioDn-3_st 335.723 A 0.123572

Total number of rows: 12646

Table truncated, full table size 353 Kbytes.




Supplementary file Size Download File type/resource
GSM1675357_PT71_u95c.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675357_PT71_u95cmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675357_PT71_u95cmas5.CHP.txt.gz 129.4 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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