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Sample GSM1675352 Query DataSets for GSM1675352
Status Public on May 06, 2015
Title becic-00235: PT69: HG_U95C
Sample type RNA
 
Source name P69_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_6
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI multifocal, SVI no, SMI yes
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 92.0695 A 0.631573
AFFX-MurIL10_at 43.8932 A 0.749204
AFFX-MurIL4_at 27.8061 A 0.794268
AFFX-MurFAS_at 16.0131 A 0.794268
AFFX-BioB-5_at 2942.46 P 0.00110197
AFFX-BioB-M_at 5079.45 P 5.16732e-05
AFFX-BioB-3_at 2532.25 P 0.00010954
AFFX-BioC-5_at 7818.48 P 6.02111e-05
AFFX-BioC-3_at 6486.87 P 5.16732e-05
AFFX-BioDn-5_at 6856.18 P 4.42873e-05
AFFX-BioDn-3_at 38886.1 P 4.42873e-05
AFFX-CreX-5_at 69272.3 P 4.42873e-05
AFFX-CreX-3_at 102182 P 4.42873e-05
AFFX-BioB-5_st 220.924 A 0.313723
AFFX-BioB-M_st 314.234 A 0.327079
AFFX-BioB-3_st 76.8164 A 0.804734
AFFX-BioC-5_st 85.056 A 0.794268
AFFX-BioC-3_st 96.7291 A 0.455413
AFFX-BioDn-5_st 903.683 A 0.0726999
AFFX-BioDn-3_st 681.026 P 0.00499819

Total number of rows: 12646

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675352_PT69_u95c.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675352_PT69_u95cmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675352_PT69_u95cmas5.CHP.txt.gz 129.4 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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