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Sample GSM1675349 Query DataSets for GSM1675349
Status Public on May 06, 2015
Title becic-00235: PT68: HG_U95C
Sample type RNA
 
Source name P68_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_6
diseasestaging: pT T2b, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI no, SVI no, SMI yes
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 150.408 A 0.672935
AFFX-MurIL10_at 233.875 A 0.396911
AFFX-MurIL4_at 66.5051 A 0.699394
AFFX-MurFAS_at 40.534 A 0.686277
AFFX-BioB-5_at 1801.09 P 0.00159257
AFFX-BioB-M_at 3075.39 P 0.000126798
AFFX-BioB-3_at 1504.57 P 0.0012475
AFFX-BioC-5_at 5143.86 P 0.00010954
AFFX-BioC-3_at 4344.25 P 5.16732e-05
AFFX-BioDn-5_at 3666.82 P 7.00668e-05
AFFX-BioDn-3_at 22942.3 P 5.16732e-05
AFFX-CreX-5_at 41809.3 P 4.42873e-05
AFFX-CreX-3_at 66085.1 P 4.42873e-05
AFFX-BioB-5_st 63.6634 A 0.425962
AFFX-BioB-M_st 236.025 A 0.51489
AFFX-BioB-3_st 73.4358 A 0.883887
AFFX-BioC-5_st 43.2953 A 0.910522
AFFX-BioC-3_st 46.7444 A 0.559354
AFFX-BioDn-5_st 406.694 A 0.275146
AFFX-BioDn-3_st 614.817 P 0.0182806

Total number of rows: 12646

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675349_PT68_u95c.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675349_PT68_u95cmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675349_PT68_u95cmas5.CHP.txt.gz 129.2 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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