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Sample GSM1675343 Query DataSets for GSM1675343
Status Public on May 06, 2015
Title becic-00235: PT66: HG_U95C
Sample type RNA
 
Source name P66_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_8
diseasestaging: pT T3b, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI multifocal, SVI yes, SMI yes
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 39.2271 A 0.860518
AFFX-MurIL10_at 129.784 A 0.52976
AFFX-MurIL4_at 71.4684 A 0.58862
AFFX-MurFAS_at 30.4468 A 0.749223
AFFX-BioB-5_at 1709.95 P 0.00179591
AFFX-BioB-M_at 3051.3 P 0.000169227
AFFX-BioB-3_at 1639.71 P 0.000509415
AFFX-BioC-5_at 5028.55 P 8.14279e-05
AFFX-BioC-3_at 3980.38 P 5.16732e-05
AFFX-BioDn-5_at 3772.71 P 4.42873e-05
AFFX-BioDn-3_at 24981.7 P 7.00668e-05
AFFX-CreX-5_at 39910.5 P 4.42873e-05
AFFX-CreX-3_at 60677.8 P 4.42873e-05
AFFX-BioB-5_st 70.365 A 0.440646
AFFX-BioB-M_st 151.19 A 0.574038
AFFX-BioB-3_st 72.7706 A 0.852061
AFFX-BioC-5_st 55.3609 A 0.860518
AFFX-BioC-3_st 24.6389 A 0.783476
AFFX-BioDn-5_st 259.93 A 0.313723
AFFX-BioDn-3_st 448.83 A 0.0894781

Total number of rows: 12646

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675343_PT66_u95c.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675343_PT66_u95cmas5.CHP.gz 4.5 Mb (ftp)(http) CHP
GSM1675343_PT66_u95cmas5.CHP.txt.gz 128.6 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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