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Sample GSM1675300 Query DataSets for GSM1675300
Status Public on May 06, 2015
Title becic-00235: PT51: HG_U95C
Sample type RNA
 
Source name P51_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_6
diseasestaging: pT T2a, pN N0, pM MX
organismpart: Prostate
histology: ALI no, ECI no, SVI no, SMI no
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 119.111 A 0.699394
AFFX-MurIL10_at 28.435 A 0.772364
AFFX-MurIL4_at 12.1309 A 0.772364
AFFX-MurFAS_at 27.7172 A 0.60308
AFFX-BioB-5_at 997.593 P 0.00359458
AFFX-BioB-M_at 2079.87 P 0.000258358
AFFX-BioB-3_at 1086.53 P 0.00179591
AFFX-BioC-5_at 3515.3 P 0.000169227
AFFX-BioC-3_at 2811.7 P 5.16732e-05
AFFX-BioDn-5_at 2653.33 P 8.14279e-05
AFFX-BioDn-3_at 15674.6 P 7.00668e-05
AFFX-CreX-5_at 30591.1 P 4.42873e-05
AFFX-CreX-3_at 51934 P 4.42873e-05
AFFX-BioB-5_st 182.99 A 0.262827
AFFX-BioB-M_st 90.1196 A 0.737173
AFFX-BioB-3_st 58.6477 A 0.876428
AFFX-BioC-5_st 32.5992 A 0.852061
AFFX-BioC-3_st 25.2053 A 0.544587
AFFX-BioDn-5_st 199.59 A 0.354453
AFFX-BioDn-3_st 377.399 A 0.108979

Total number of rows: 12646

Table truncated, full table size 353 Kbytes.




Supplementary file Size Download File type/resource
GSM1675300_PT51_u95c.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675300_PT51_u95cmas5.CHP.gz 4.5 Mb (ftp)(http) CHP
GSM1675300_PT51_u95cmas5.CHP.txt.gz 128.8 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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