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Sample GSM1675297 Query DataSets for GSM1675297
Status Public on May 06, 2015
Title becic-00235: PT50: HG_U95C
Sample type RNA
 
Source name P50_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI focal, SVI no, SMI no
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 52.3423 A 0.860518
AFFX-MurIL10_at 226.208 A 0.340661
AFFX-MurIL4_at 91.5216 A 0.712257
AFFX-MurFAS_at 55.9476 A 0.904333
AFFX-BioB-5_at 19712.9 P 9.4506e-05
AFFX-BioB-M_at 36833.8 P 4.42873e-05
AFFX-BioB-3_at 24047.6 P 4.42873e-05
AFFX-BioC-5_at 25641 P 4.42873e-05
AFFX-BioC-3_at 17414.9 P 4.42873e-05
AFFX-BioDn-5_at 21053.8 P 4.42873e-05
AFFX-BioDn-3_at 78102.3 P 4.42873e-05
AFFX-CreX-5_at 173524 P 4.42873e-05
AFFX-CreX-3_at 213236 P 4.42873e-05
AFFX-BioB-5_st 949.562 M 0.0584438
AFFX-BioB-M_st 978 P 0.00844047
AFFX-BioB-3_st 1528.94 P 0.0284573
AFFX-BioC-5_st 67.767 A 0.760937
AFFX-BioC-3_st 215.499 A 0.300606
AFFX-BioDn-5_st 832.28 M 0.0464816
AFFX-BioDn-3_st 1466.48 P 0.00159257

Total number of rows: 12646

Table truncated, full table size 349 Kbytes.




Supplementary file Size Download File type/resource
GSM1675297_PT50_u95c.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675297_PT50_u95cmas5.CHP.gz 4.2 Mb (ftp)(http) CHP
GSM1675297_PT50_u95cmas5.CHP.txt.gz 130.0 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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