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Sample GSM1675288 Query DataSets for GSM1675288
Status Public on May 06, 2015
Title becic-00235: PT46: HG_U95C
Sample type RNA
 
Source name P46_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI focal, SVI no, SMI no
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 42.2111 A 0.945787
AFFX-MurIL10_at 113.477 A 0.645547
AFFX-MurIL4_at 213.86 A 0.195266
AFFX-MurFAS_at 69.5808 A 0.686277
AFFX-BioB-5_at 9270.23 P 0.000224668
AFFX-BioB-M_at 18201 P 4.42873e-05
AFFX-BioB-3_at 12474.4 P 4.42873e-05
AFFX-BioC-5_at 12139.3 P 6.02111e-05
AFFX-BioC-3_at 8872.01 P 5.16732e-05
AFFX-BioDn-5_at 11065.9 P 4.42873e-05
AFFX-BioDn-3_at 48404.9 P 4.42873e-05
AFFX-CreX-5_at 111068 P 4.42873e-05
AFFX-CreX-3_at 150052 P 4.42873e-05
AFFX-BioB-5_st 389.963 A 0.0956669
AFFX-BioB-M_st 794.307 P 0.0396608
AFFX-BioB-3_st 560.997 A 0.216524
AFFX-BioC-5_st 81.5403 A 0.883887
AFFX-BioC-3_st 219.584 A 0.313723
AFFX-BioDn-5_st 626.396 A 0.0629293
AFFX-BioDn-3_st 1332.87 P 0.0032123

Total number of rows: 12646

Table truncated, full table size 349 Kbytes.




Supplementary file Size Download File type/resource
GSM1675288_PT46_u95c.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675288_PT46_u95cmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675288_PT46_u95cmas5.CHP.txt.gz 128.7 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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