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Sample GSM1675267 Query DataSets for GSM1675267
Status Public on May 06, 2015
Title becic-00235: PT39: HG_U95C
Sample type RNA
 
Source name P39_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI focal, SVI no, SMI yes
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 29.8748 A 0.937071
AFFX-MurIL10_at 73.8412 A 0.772364
AFFX-MurIL4_at 121.003 A 0.514891
AFFX-MurFAS_at 51.6983 A 0.617411
AFFX-BioB-5_at 13433.9 P 0.00010954
AFFX-BioB-M_at 24913.3 P 4.42873e-05
AFFX-BioB-3_at 12200.7 P 4.42873e-05
AFFX-BioC-5_at 21405.8 P 5.16732e-05
AFFX-BioC-3_at 16099.6 P 4.42873e-05
AFFX-BioDn-5_at 15919.2 P 4.42873e-05
AFFX-BioDn-3_at 73362 P 5.16732e-05
AFFX-CreX-5_at 172805 P 4.42873e-05
AFFX-CreX-3_at 177223 P 4.42873e-05
AFFX-BioB-5_st 963.306 P 0.0309764
AFFX-BioB-M_st 1027.01 P 0.00227496
AFFX-BioB-3_st 1349.19 P 0.0151826
AFFX-BioC-5_st 77.4661 A 0.868639
AFFX-BioC-3_st 154.455 A 0.440646
AFFX-BioDn-5_st 982.654 P 0.0309764
AFFX-BioDn-3_st 1978.64 P 0.000581214

Total number of rows: 12646

Table truncated, full table size 350 Kbytes.




Supplementary file Size Download File type/resource
GSM1675267_PT39_u95c.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675267_PT39_u95cmas5.CHP.gz 4.3 Mb (ftp)(http) CHP
GSM1675267_PT39_u95cmas5.CHP.txt.gz 129.7 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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