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Sample GSM1675264 Query DataSets for GSM1675264
Status Public on May 06, 2015
Title becic-00235: PT38: HG_U95C
Sample type RNA
 
Source name P38_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T2b, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI no, SVI no, SMI no
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 54.8209 A 0.783476
AFFX-MurIL10_at 193.866 A 0.58862
AFFX-MurIL4_at 151.138 A 0.559354
AFFX-MurFAS_at 188.276 A 0.227636
AFFX-BioB-5_at 14372.5 P 6.02111e-05
AFFX-BioB-M_at 29361.3 P 4.42873e-05
AFFX-BioB-3_at 17944.4 P 4.42873e-05
AFFX-BioC-5_at 18355.3 P 4.42873e-05
AFFX-BioC-3_at 13061.4 P 5.16732e-05
AFFX-BioDn-5_at 15438.5 P 4.42873e-05
AFFX-BioDn-3_at 64143.1 P 5.16732e-05
AFFX-CreX-5_at 152220 P 4.42873e-05
AFFX-CreX-3_at 200645 P 4.42873e-05
AFFX-BioB-5_st 392.421 A 0.239063
AFFX-BioB-M_st 671.08 P 0.0138105
AFFX-BioB-3_st 964.751 P 0.026111
AFFX-BioC-5_st 62.8621 A 0.814869
AFFX-BioC-3_st 161.377 A 0.287743
AFFX-BioDn-5_st 800.222 M 0.0542134
AFFX-BioDn-3_st 1272.31 P 0.00110197

Total number of rows: 12646

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675264_PT38_u95c.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675264_PT38_u95cmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675264_PT38_u95cmas5.CHP.txt.gz 129.1 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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