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Sample GSM1675173 Query DataSets for GSM1675173
Status Public on May 06, 2015
Title becic-00235: PN75: HG_U95C
Sample type RNA
 
Source name P75_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_6
diseasestaging: pT T2b, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI no, SVI no, SMI no
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 52.3815 A 0.834139
AFFX-MurIL10_at 21.524 A 0.868639
AFFX-MurIL4_at 50.5825 A 0.588696
AFFX-MurFAS_at 13.9355 A 0.834139
AFFX-BioB-5_at 2468.53 P 0.000581214
AFFX-BioB-M_at 4719.87 P 5.16732e-05
AFFX-BioB-3_at 1885.03 P 6.02111e-05
AFFX-BioC-5_at 6476.54 P 7.00668e-05
AFFX-BioC-3_at 5496.87 P 4.42873e-05
AFFX-BioDn-5_at 5049.9 P 4.42873e-05
AFFX-BioDn-3_at 24855.9 P 4.42873e-05
AFFX-CreX-5_at 42975 P 4.42873e-05
AFFX-CreX-3_at 60544.6 P 4.42873e-05
AFFX-BioB-5_st 215.822 A 0.185131
AFFX-BioB-M_st 61.5113 A 0.883887
AFFX-BioB-3_st 83.9651 A 0.760937
AFFX-BioC-5_st 20.8136 A 0.945787
AFFX-BioC-3_st 10.229 A 0.617401
AFFX-BioDn-5_st 283.501 A 0.216524
AFFX-BioDn-3_st 611.49 M 0.0464816

Total number of rows: 12646

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675173_PN75_u95c.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675173_PN75_u95cmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675173_PN75_u95cmas5.CHP.txt.gz 129.2 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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