NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1675121 Query DataSets for GSM1675121
Status Public on May 06, 2015
Title becic-00235: PN56: HG_U95C
Sample type RNA
 
Source name P56_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI focal, SVI no, SMI no
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 68.6694 A 0.574038
AFFX-MurIL10_at 42.4973 A 0.631562
AFFX-MurIL4_at 88.6571 A 0.175328
AFFX-MurFAS_at 52.8116 A 0.60308
AFFX-BioB-5_at 2214.14 P 0.000856509
AFFX-BioB-M_at 4014.96 P 7.00668e-05
AFFX-BioB-3_at 1645.83 P 0.000972149
AFFX-BioC-5_at 5411.1 P 8.14279e-05
AFFX-BioC-3_at 4425.55 P 4.42873e-05
AFFX-BioDn-5_at 3806.78 P 6.02111e-05
AFFX-BioDn-3_at 18675.8 P 6.02111e-05
AFFX-CreX-5_at 35038.8 P 4.42873e-05
AFFX-CreX-3_at 55861.7 P 4.42873e-05
AFFX-BioB-5_st 188.64 A 0.262827
AFFX-BioB-M_st 343.941 A 0.470241
AFFX-BioB-3_st 40.1207 A 0.910522
AFFX-BioC-5_st 20.3348 A 0.945787
AFFX-BioC-3_st 16.0899 A 0.712257
AFFX-BioDn-5_st 188.067 A 0.354453
AFFX-BioDn-3_st 198.997 A 0.116113

Total number of rows: 12646

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675121_PN56_u95c.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675121_PN56_u95cmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675121_PN56_u95cmas5.CHP.txt.gz 129.0 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap