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Sample GSM1675106 Query DataSets for GSM1675106
Status Public on May 06, 2015
Title becic-00235: PN50: HG_U95C
Sample type RNA
 
Source name P50_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI focal, SVI no, SMI no
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL93
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 116.105 A 0.574038
AFFX-MurIL10_at 53.3084 A 0.686277
AFFX-MurIL4_at 24.0026 A 0.672921
AFFX-MurFAS_at 102.443 A 0.39692
AFFX-BioB-5_at 1252.45 P 0.0044838
AFFX-BioB-M_at 2092.58 P 0.000340305
AFFX-BioB-3_at 1166.31 P 0.0032123
AFFX-BioC-5_at 4690.14 P 0.000126798
AFFX-BioC-3_at 3574.58 P 4.42873e-05
AFFX-BioDn-5_at 3725.13 P 8.14279e-05
AFFX-BioDn-3_at 20824.6 P 6.02111e-05
AFFX-CreX-5_at 41011.3 P 4.42873e-05
AFFX-CreX-3_at 66723.2 P 4.42873e-05
AFFX-BioB-5_st 33.856 A 0.645547
AFFX-BioB-M_st 93.7546 A 0.794268
AFFX-BioB-3_st 48.3331 A 0.916408
AFFX-BioC-5_st 20.115 A 0.910522
AFFX-BioC-3_st 23.4896 A 0.724854
AFFX-BioDn-5_st 76.8788 A 0.470241
AFFX-BioDn-3_st 328.626 A 0.123572

Total number of rows: 12646

Table truncated, full table size 352 Kbytes.




Supplementary file Size Download File type/resource
GSM1675106_PN50_u95c.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675106_PN50_u95cmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675106_PN50_u95cmas5.CHP.txt.gz 129.0 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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