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Sample GSM1025293 Query DataSets for GSM1025293
Status Public on Oct 27, 2012
Title Skeletal Muscle_Diabetes
Sample type RNA
 
Source name Skeletal Muscle_Diabetes
Organism Rattus norvegicus
Characteristics strain: Sprague–Dawley
age: 8 weeks
tissue: Skeletal Muscle
Treatment protocol The type 2 diabetic model group was injected intraperitoneally with a low dose of STZ (30 mg/kg).
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Oct 25, 2012
Last update date Oct 27, 2012
Contact name xl tang
E-mail(s) xltangmail@163.com
Organization name Nanchang university
Street address Xuefu road
City Nanchang
ZIP/Postal code 330008
Country China
 
Platform ID GPL8031
Series (1)
GSE41832 Gene Expression Profiles in Skeletal Muscle and Liver of Type 2 Diabetes Rats

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_160502 -0.6 0.46303
ILMN_160506 -4.5 0.70303
ILMN_160514 0.2 0.41818
ILMN_160517 -1.3 0.49818
ILMN_160518 -1.7 0.51515
ILMN_160521 -6.4 0.80121
ILMN_160524 5.5 0.18788
ILMN_160537 -5.4 0.74667
ILMN_160538 -14 0.98061
ILMN_160546 2.3 0.3103
ILMN_160550 0.8 0.38182
ILMN_160553 3.5 0.25333
ILMN_160554 -6.1 0.78545
ILMN_160556 4.4 0.22788
ILMN_160558 43.6 0.00485
ILMN_160560 4.5 0.22424
ILMN_160566 6 0.17333
ILMN_160572 -7.5 0.84606
ILMN_160574 -9.6 0.91394
ILMN_160576 -3.7 0.64727

Total number of rows: 22226

Table truncated, full table size 490 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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