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Sample GSM1025291 Query DataSets for GSM1025291
Status Public on Oct 27, 2012
Title Liver_Control
Sample type RNA
 
Source name Liver_Control
Organism Rattus norvegicus
Characteristics strain: Sprague–Dawley
age: 8 weeks
tissue: Liver
Treatment protocol The type 2 diabetic model group was injected intraperitoneally with a low dose of STZ (30 mg/kg).
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Oct 25, 2012
Last update date Oct 27, 2012
Contact name xl tang
E-mail(s) xltangmail@163.com
Organization name Nanchang university
Street address Xuefu road
City Nanchang
ZIP/Postal code 330008
Country China
 
Platform ID GPL8031
Series (1)
GSE41832 Gene Expression Profiles in Skeletal Muscle and Liver of Type 2 Diabetes Rats

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_160502 -5.6 0.79273
ILMN_160506 -6.7 0.85455
ILMN_160514 16.3 0.01576
ILMN_160517 0.5 0.41576
ILMN_160518 -0.8 0.52
ILMN_160521 -3.1 0.65333
ILMN_160524 5 0.19394
ILMN_160537 -3.1 0.65333
ILMN_160538 -8 0.90424
ILMN_160546 6.1 0.16
ILMN_160550 -5.2 0.76727
ILMN_160553 3.5 0.26182
ILMN_160554 0.3 0.43758
ILMN_160556 -4.5 0.73697
ILMN_160558 14.3 0.02303
ILMN_160560 3.2 0.27152
ILMN_160566 9.4 0.08
ILMN_160572 -9 0.93212
ILMN_160574 -7.4 0.88364
ILMN_160576 -8.3 0.91515

Total number of rows: 22226

Table truncated, full table size 483 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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