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Series GSE48556 Query DataSets for GSE48556
Status Public on Jul 18, 2013
Title Gene expression profiles from peripheral blood mononuclear cells (PBMCs) of osteoarthritis patients and healthy controls
Organism Homo sapiens
Experiment type Expression profiling by array
Summary By performing a comprehensive exploration of peripheral blood by microarray analysis from a subset of the Genetics osteoARthritis and Progression (GARP) study in comparison with sex and age-matched healthy controls we have identified disease specific gene expression networks. Our data hint at the relevance of apoptosis as an etiological factor in osteoarthritis onset, thereby qualifying expression profiling of blood as a useful tool to understand the underlying molecular mechanisms of osteoarthritis.
 
Overall design Case-control study comparing gene expression profiles generated with total messenger RNA obtained from peripheral blood mononuclear cells of controls with that of osteoarthritis (OA) patients from the GARP study.
The GARP study consists in Dutch Caucasian sib pairs with symptomatic OA at multiple joint locations and has been described previously by Riyazi et al (Ann Rheum Dis 2005;64:438-43).
 
Contributor(s) Ramos YF, Bos SD, Lakenberg N, Böhringer S, den Hollander WJ, Kloppenburg M, Slagboom E, Meulenbelt I
Citation(s) 23864235
Submission date Jul 05, 2013
Last update date Aug 16, 2018
Contact name Yolande F. M. Ramos
E-mail(s) y.f.m.ramos@lumc.nl
Organization name Leiden University Medical Center
Department Molecular Epidemiology
Street address Einthovenweg 20
City Leiden
ZIP/Postal code 2333 ZC
Country Netherlands
 
Platforms (1)
GPL6947 Illumina HumanHT-12 V3.0 expression beadchip
Samples (139)
GSM1182186 PBMC_GARP_1
GSM1182187 PBMC_GARP_2
GSM1182188 PBMC_GARP_3
Relations
BioProject PRJNA210819

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE48556_RAW.tar 6.2 Mb (http)(custom) TAR
GSE48556_non-normalized_data.txt.gz 18.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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