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| Status |
Public on Jul 23, 2004 |
| Title |
Analysis of murine epididymal adipose tissue |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
|
| Summary |
Functional genomic analysis of epididymal adipose tissue extracted from polygenic obese mice fed either a control (1% linoleic acid) or treatment (1% trans 10, cis 12 conjugated linoleic acid) diet after five or fourteen days.
Keywords = Obesity
Keywords = conjugated linoleic acid
Keywords = polygenic obese mice
Keywords = adiposity
Keywords = lipid metabolism
Keywords = apoptosis
Keywords: repeat sample
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| Contributor(s) |
House RL, Cassady JP, Eisen EJ, Eling TE, Collins JB, Grissom SF, Odle J |
| Citation(s) |
15888570 |
| Submission date |
Jul 21, 2004 |
| Last update date |
Dec 06, 2012 |
| Contact name |
Joseph Cassady |
| E-mail(s) |
joe_cassady@ncsu.edu
|
| Phone |
(919) 513-0262
|
| Organization name |
North Carolina State University
|
| Department |
Functional Genomics/Animal Science
|
| Lab |
Jack Odle, Joseph Cassady, Gene Eisen
|
| Street address |
|
| City |
Raleigh |
| State/province |
NC |
| ZIP/Postal code |
27695 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL891 |
Agilent-011978 Mouse Microarray G4121A (Feature Number version) |
|
| Samples (8)
|
| GSM27145 |
Day 5 Epididymal Adipose Array#1 |
| GSM27154 |
Day 5 Epididymal Adipose Array#2 |
| GSM27155 |
Day 5 Epididymal Adipose Array#3 |
| GSM27158 |
Day 5 Epididymal Adipose Array#4 |
| GSM27162 |
Day 14 Epididymal Adipose Array#1 |
| GSM27164 |
Day 14 Epididymal Adipose Array#2 |
| GSM27166 |
Day 14 Epididymal Adipose Array#3 |
| GSM27168 |
Day 14 Epididymal Adipose Array#4 |
|
| Relations |
| BioProject |
PRJNA90725 |
| TABLE 1: Epi_5d_all header descriptions |
| Accession # |
|
| Gene Description |
|
| Ratio (CLA:LA) |
|
| Fold Change |
|
| P-value |
|
| Data table |
| Accession # |
Gene Description |
Ratio (CLA:LA) |
Fold Change |
P-value |
| NM_023716 |
Mus musculus RIKEN cDNA 2410129E14 gene (2410129E14Rik), mRNA. |
0.98 |
-1.02 |
0.81 |
| AK014270 |
RIKEN cDNA 3110082D06 gene |
0.9 |
-1.11 |
0.52 |
| BM934198.1 |
Mus musculus cDNA clone UI-M-CG0p-bmu-a-08-0-UI 5 |
1.03 |
1.03 |
0.73 |
| NM_021414.1 |
Mus musculus RIKEN cDNA 4631427C17 gene (4631427C17Rik), mRNA |
0.94 |
-1.06 |
0.6 |
| AK006330 |
RIKEN cDNA 1700025D19 gene |
0.99 |
-1.01 |
0.91 |
| BC013508 |
RIKEN cDNA 9130017N09 gene |
0.96 |
-1.04 |
0.64 |
| NM_019799 |
Rhesus blood group-associated C glycoprotein |
0.97 |
-1.04 |
0.79 |
| AK016765 |
RIKEN cDNA 4933411C14 gene |
0.91 |
-1.1 |
0.47 |
| AK013591 |
Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900024M11, full insert sequence. |
0.95 |
-1.05 |
0.55 |
| NM_147091.1 |
Mus musculus olfactory receptor MOR14-3 (MOR14-3), mRNA |
1.14 |
1.14 |
0.16 |
| AJ272345 |
RIKEN cDNA 2810055E05 gene |
1.02 |
1.02 |
0.89 |
| AK033603 |
similar to MLZE [Mus musculus] |
1.11 |
1.11 |
0.03 |
| NM_007443 |
alpha 1 microglobulin/bikunin |
0.97 |
-1.04 |
0.75 |
| AK017111 |
RIKEN cDNA 4933438K21 gene |
0.9 |
-1.11 |
0.57 |
| AF038572 |
jagged 2 |
0.78 |
-1.29 |
4.46E-05 |
| AF061933 |
regulator of G-protein signaling 6 |
0.84 |
-1.19 |
0.06 |
| AK039745 |
weakly similar to 8430428J23RIK PROTEIN [Mus musculus] |
1.03 |
1.03 |
0.72 |
| AK008968 |
RIKEN cDNA 2210417J23 gene |
0.79 |
-1.27 |
0.02 |
| BG921747 |
expressed sequence AI256638 |
0.97 |
-1.03 |
0.71 |
| NM_022885 |
zinc transporter like 1 |
1.04 |
1.04 |
0.79 |
Total number of rows: 20841
Table truncated, full table size 1501 Kbytes.
| TABLE 2: Epi_5d_p01 header descriptions |
| Accession # |
|
| Gene Description |
|
| Ratio (CLA:LA) |
|
| Fold Change |
|
| P-value |
|
| Data table |
| Accession # |
Gene Description |
Ratio (CLA:LA) |
Fold Change |
P-value |
| AF038572 |
jagged 2 |
0.78 |
-1.29 |
4.46E-05 |
| NM_011858 |
odd Oz/ten-m homolog 4 (Drosophila) |
0.55 |
-1.82 |
5.39E-03 |
| AK050359 |
hypothetical Cysteine-rich region containing protein |
0.87 |
-1.15 |
9.77E-03 |
| NM_023476 |
lipocalin 7 |
0.59 |
-1.69 |
3.89E-06 |
| NM_011795 |
C1q related factor |
1.33 |
1.33 |
8.79E-03 |
| NM_015749 |
transcobalamin 2 |
0.68 |
-1.46 |
1.46E-03 |
| AK028482 |
hypothetical Src homology 3 (SH3) domain profile/TPR repeat/Repeat in HS1/Cortactin/Src homology 3 (SH3) domain containing protein |
0.73 |
-1.36 |
5.19E-04 |
| BC026674 |
Mus musculus RIKEN cDNA 6720425G15 gene, mRNA (cDNA clone IMAGE:5039248), partial cds. |
0.81 |
-1.24 |
9.42E-03 |
| S40532 |
NSCL-2=basic domain helix-loop-helix gene [mice, embryo, mRNA, 2230 nt]. |
0.59 |
-1.7 |
4.22E-04 |
| AK041477 |
weakly similar to RAT CYTOCHROME P-450B TYPE E (FRAGMENT) [Rattus norvegicus] |
1.36 |
1.36 |
1.98E-04 |
| NM_021715 |
carbohydrate (N-acetylglucosamino) sulfotransferase 7 |
0.71 |
-1.41 |
3.65E-04 |
| AK017211 |
RIKEN cDNA 5133400A03 gene |
0.66 |
-1.51 |
6.32E-05 |
| AK015155 |
RIKEN cDNA 4930415O20 gene |
0.8 |
-1.26 |
1.14E-03 |
| X68882 |
M.musculus Emx2 mRNA. |
1.33 |
1.33 |
1.99E-03 |
| NM_007704 |
channel-interacting PDZ domain protein |
0.76 |
-1.31 |
5.83E-03 |
| AK078638 |
vomeronasal 2, receptor, 11 |
0.71 |
-1.42 |
9.74E-04 |
| NM_133900 |
Mus musculus phosphoserine phosphatase (Psph), mRNA. |
1.57 |
1.57 |
1.51E-07 |
| NM_008305 |
perlecan (heparan sulfate proteoglycan 2) |
0.61 |
-1.64 |
2.14E-04 |
| NM_026610 |
Mus musculus NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4 (Ndufb4), mRNA. |
0.71 |
-1.41 |
9.44E-03 |
| X69620 |
inhibin beta-B |
0.79 |
-1.26 |
9.90E-03 |
Total number of rows: 1029
Table truncated, full table size 76 Kbytes.
| TABLE 3: Epi_14d_all header descriptions |
| Accession # |
|
| Gene Description |
|
| Ratio (CLA:LA) |
|
| Fold Change |
|
| P-value |
|
| Data table |
| Accession # |
Gene Description |
Ratio (CLA:LA) |
Fold Change |
P-value |
| NM_023716 |
Mus musculus RIKEN cDNA 2410129E14 gene (2410129E14Rik), mRNA. |
1.02 |
1.02 |
0.85 |
| AK014270 |
RIKEN cDNA 3110082D06 gene |
0.95 |
-1.05 |
0.7 |
| BM934198.1 |
Mus musculus cDNA clone UI-M-CG0p-bmu-a-08-0-UI 5 |
0.93 |
-1.07 |
0.54 |
| NM_021414.1 |
Mus musculus RIKEN cDNA 4631427C17 gene (4631427C17Rik), mRNA |
0.85 |
-1.17 |
0.14 |
| AK006330 |
RIKEN cDNA 1700025D19 gene |
0.85 |
-1.18 |
0.05 |
| BC013508 |
RIKEN cDNA 9130017N09 gene |
0.98 |
-1.02 |
0.74 |
| NM_019799 |
Rhesus blood group-associated C glycoprotein |
0.95 |
-1.05 |
0.52 |
| AK016765 |
RIKEN cDNA 4933411C14 gene |
1 |
1 |
0.95 |
| AK013591 |
Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900024M11, full insert sequence. |
1.09 |
1.09 |
0.41 |
| NM_147091.1 |
Mus musculus olfactory receptor MOR14-3 (MOR14-3), mRNA |
1 |
-1 |
0.98 |
| AJ272345 |
RIKEN cDNA 2810055E05 gene |
1 |
-1 |
0.96 |
| AK033603 |
similar to MLZE [Mus musculus] |
1.03 |
1.03 |
0.86 |
| NM_007443 |
alpha 1 microglobulin/bikunin |
1.09 |
1.09 |
0.47 |
| AK017111 |
RIKEN cDNA 4933438K21 gene |
1.26 |
1.26 |
0.07 |
| AF038572 |
jagged 2 |
0.91 |
-1.1 |
0.57 |
| AF061933 |
regulator of G-protein signaling 6 |
0.9 |
-1.11 |
0.39 |
| AK039745 |
weakly similar to 8430428J23RIK PROTEIN [Mus musculus] |
0.97 |
-1.03 |
0.78 |
| AK008968 |
RIKEN cDNA 2210417J23 gene |
1.13 |
1.13 |
0.55 |
| BG921747 |
expressed sequence AI256638 |
1.06 |
1.06 |
0.49 |
| NM_022885 |
zinc transporter like 1 |
1.06 |
1.06 |
0.68 |
Total number of rows: 20840
Table truncated, full table size 1501 Kbytes.
| TABLE 4: Epi_14d_p01 header descriptions |
| Accession # |
|
| Gene Description |
|
| Ratio (CLA:LA) |
|
| Fold Change |
|
| P-value |
|
| Data table |
| Accession # |
Gene Description |
Ratio (CLA:LA) |
Fold Change |
P-value |
| NM_023737 |
RIKEN cDNA 1300002P22 gene |
1.73 |
1.73 |
1.62E-03 |
| NM_138686 |
Mus musculus cystin 1 (Cys1), mRNA. |
0.68 |
-1.47 |
1.20E-03 |
| NG_001698.1 |
Mus musculus olfactory receptor GA_x5J8B7W5BNN-892919-892147 (GA_x5J8B7W5BNN-892919-892147) pseudogene |
1.46 |
1.46 |
2.04E-04 |
| BB391583 |
ESTs, Highly similar to IRE2 RAT IRON-RESPONSIVE ELEMENT BINDING PROTEIN 2 [R.norvegicus] |
1.46 |
1.46 |
6.44E-03 |
| NM_023476 |
lipocalin 7 |
0.6 |
-1.66 |
1.08E-03 |
| NM_010727 |
ligand of numb-protein X |
0.69 |
-1.45 |
5.37E-06 |
| AK080022 |
Mus musculus MAPA protein (LOC211228), mRNA |
1.64 |
1.64 |
1.12E-03 |
| AK005870 |
Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700011J10, full insert sequence. |
0.86 |
-1.17 |
6.92E-03 |
| NM_023066 |
aspartate-beta-hydroxylase |
0.62 |
-1.61 |
3.68E-09 |
| NM_021715 |
carbohydrate (N-acetylglucosamino) sulfotransferase 7 |
0.78 |
-1.29 |
7.14E-03 |
| NM_013826 |
molybdenum cofactor synthesis 2 |
0.72 |
-1.39 |
1.80E-05 |
| NM_010833 |
moesin |
1.45 |
1.45 |
1.26E-03 |
| NM_009115 |
S100 protein, beta polypeptide, neural |
0.52 |
-1.93 |
1.33E-07 |
| X98848 |
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 |
0.66 |
-1.52 |
3.36E-03 |
| NM_138648 |
Mus musculus oxidized low density lipoprotein (lectin-like) receptor 1 (Olr1), mRNA. |
4.09 |
4.09 |
2.52E-09 |
| AK077581 |
HYPOTHETICAL PROTEIN KIAA1094 homolog [Homo sapiens] |
0.77 |
-1.31 |
6.70E-04 |
| BC024899 |
Mus musculus, eukaryotic translation initiation factor 5A, clone MGC:25474 IMAGE:4482804, mRNA, complete cds |
0.65 |
-1.54 |
4.67E-05 |
| AK051649 |
peptidylglycine alpha-amidating monooxygenase |
1.68 |
1.68 |
1.92E-03 |
| AI851834 |
expressed sequence AI851834 |
1.24 |
1.24 |
4.99E-03 |
| NM_018770 |
immunoglobulin superfamily, member 4 |
1.45 |
1.45 |
2.97E-03 |
Total number of rows: 1228
Table truncated, full table size 93 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSE1580_RAW.tar |
228.6 Mb |
(http)(custom) |
TAR (of TIFF) |
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