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Platform GPL1420 Query DataSets for GPL1420
Status Public on Nov 15, 2004
Title GLYCOv2 glycogene array
Technology type spotted oligonucleotide
Distribution custom-commercial
Organisms Homo sapiens; Mus musculus
 
Description For analysis of data from human samples, ignore all mouse probe set data. For analysis of mouse data, ignore all human probe set data.
A custom-designed Glyco-gene Chip array that contains probe sets to monitor the expression of human and mouse transcripts relevant to the Consortium for Functional Glycomics.The following classes of genes are represented on the GLYCOv2 Gene Chip: Glycosyltransferases Glycan-binding proteins (GBP) Sulfotransferases C-type lectins Neuraminidases Nucleotide sugar synthesis and transporter proteins N-glycan biosynthesis related genes Mucins Proteoglycans Growth factors Cytokines Chemokines and Conserved oligomeric Golgi (COG) complex genes. Many of the probe sets are represented up to three times on the array. Replicate probe sets are all indicated by a notation of the copy in the probe set ID.
Available as a resource throught the Consortium of Functional Glycomics. See this URL for complete information http://web.mit.edu/glycomics/consortium/
Many of the the probe sets on this array are represented in either two or three identical copies. Probe sets with more than one copy on this array contain the text: "Copy1", "Copy2" or "Copy3" within the probe set name.
The .CDF file for this array may be obtained by contacting Steven Head (shead@scripps.edu) or Timothy Gilamrtin (timgil@scripps.edu) or through the TSRI DNA Array Core Facility (http://www.scripps.edu/services/dna_array/).
 
Contributor(s) Gilmartin TJ, Head SR, Paulson JC, Comelli EM
Submission date Aug 27, 2004
Last update date Apr 05, 2007
Contact name Steven Head
E-mail(s) shead@scripps.edu
Phone 858 784-2263
Organization name The Scripps Research Institute
Street address 10550 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Samples (6) GSM29632, GSM29633, GSM29634, GSM29635, GSM29636, GSM29637
Series (1)
GSE1712 Glycoconjugate expression profiling in mouse postnatal cerebellar development

Data table header descriptions
ID probe set name
source original array from which probe set was taken
Probeset ID
Category annotation level 1
Sub_category annotation level 2
Common_name annotation level 3
GB_ACC GenBank accession number
ORGANISM organism for which the probe set was designed
SPOT_ID spot identifier

Data table
ID source Probeset ID Category Sub_category Common_name GB_ACC ORGANISM SPOT_ID
219436_Copy1_s_at HG-U133_Plus_2 219436_s_at Adhesion Molecule Selectin Ligand Endomucin AF205940 Homo sapiens
219436_Copy2_s_at HG-U133_Plus_2 219436_s_at Adhesion Molecule Selectin Ligand Endomucin AF205940 Homo sapiens
219436_Copy3_s_at HG-U133_Plus_2 219436_s_at Adhesion Molecule Selectin Ligand Endomucin AF205940 Homo sapiens
222885_Copy1_at HG-U133_Plus_2 222885_at Adhesion molecule Selectin ligand Endomucin AF205940 Homo sapiens
222885_Copy2_at HG-U133_Plus_2 222885_at Adhesion molecule Selectin ligand Endomucin AF205940 Homo sapiens
222885_Copy3_at HG-U133_Plus_2 222885_at Adhesion molecule Selectin ligand Endomucin AF205940 Homo sapiens
202328_Copy1_s_at HG-U133_Plus_2 202328_s_at CBP:C-Type Lectin 10-Polycystin Polycystin 1 NM_000296.1 Homo sapiens
202328_Copy2_s_at HG-U133_Plus_2 202328_s_at CBP:C-Type Lectin 10-Polycystin Polycystin 1 NM_000296.1 Homo sapiens
202328_Copy3_s_at HG-U133_Plus_2 202328_s_at CBP:C-Type Lectin 10-Polycystin Polycystin 1 NM_000296.1 Homo sapiens
1561849_Copy1_at HG-U133_Plus_2 1561849_at CBP:C-Type Lectin 10-Polycystin Polycystin 1-like protein 2 from EST BC014120 Homo sapiens
1561849_Copy2_at HG-U133_Plus_2 1561849_at CBP:C-Type Lectin 10-Polycystin Polycystin 1-like protein 2 from EST BC014120 Homo sapiens
1561849_Copy3_at HG-U133_Plus_2 1561849_at CBP:C-Type Lectin 10-Polycystin Polycystin 1-like protein 2 from EST BC014120 Homo sapiens
1554371_Copy1_at HG-U133_Plus_2 1554371_at CBP:C-Type Lectin 10-Polycystin Polycystin 1-like protein 2 from EST - Short BC014157 Homo sapiens
1554371_Copy2_at HG-U133_Plus_2 1554371_at CBP:C-Type Lectin 10-Polycystin Polycystin 1-like protein 2 from EST - Short BC014157 Homo sapiens
1554371_Copy3_at HG-U133_Plus_2 1554371_at CBP:C-Type Lectin 10-Polycystin Polycystin 1-like protein 2 from EST - Short BC014157 Homo sapiens
1559261_Copy1_a_at HG-U133_Plus_2 1559261_a_at CBP:C-Type Lectin 10-Polycystin Polycystin 1-like protein 2 -Long Trans NM_052892 Homo sapiens
1559261_Copy2_a_at HG-U133_Plus_2 1559261_a_at CBP:C-Type Lectin 10-Polycystin Polycystin 1-like protein 2 -Long Trans NM_052892 Homo sapiens
1559261_Copy3_a_at HG-U133_Plus_2 1559261_a_at CBP:C-Type Lectin 10-Polycystin Polycystin 1-like protein 2 -Long Trans NM_052892 Homo sapiens
203688_Copy1_at HG-U133_Plus_2 203688_at CBP:C-Type Lectin 10-Polycystin Polycystin 2 - Not a C-type lectin NM_000297.1 Homo sapiens
203688_Copy2_at HG-U133_Plus_2 203688_at CBP:C-Type Lectin 10-Polycystin Polycystin 2 - Not a C-type lectin NM_000297.1 Homo sapiens

Total number of rows: 4682

Table truncated, full table size 543 Kbytes.






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