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    Btf3l4 basic transcription factor 3-like 4 [ Mus musculus (house mouse) ]

    Gene ID: 70533, updated on 3-Apr-2024

    Summary

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    Official Symbol
    Btf3l4provided by MGI
    Official Full Name
    basic transcription factor 3-like 4provided by MGI
    Primary source
    MGI:MGI:1915312
    See related
    Ensembl:ENSMUSG00000028568 AllianceGenome:MGI:1915312
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4632412E09Rik; 5730434I03Rik
    Summary
    Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Orthologous to human BTF3L4 (basic transcription factor 3 like 4). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in CNS E14 (RPKM 19.6), whole brain E14.5 (RPKM 19.2) and 23 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    4 C7; 4 50.64 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (108671489..108691445, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (108814295..108834302, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene zinc finger, FYVE domain containing 9 Neighboring gene ribosomal protein L9 pseudogene Neighboring gene predicted gene, 53266 Neighboring gene STARR-seq mESC enhancer starr_11051 Neighboring gene STARR-seq mESC enhancer starr_11052 Neighboring gene STARR-positive B cell enhancer mm9_chr4:108520274-108520575 Neighboring gene thioredoxin domain containing 12 (endoplasmic reticulum) Neighboring gene KTI12 homolog, chromatin associated Neighboring gene RAB3B, member RAS oncogene family Neighboring gene STARR-seq mESC enhancer starr_11058 Neighboring gene RIKEN cDNA 8030443G20 gene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

      See all (25) citations in PubMed

      GeneRIFs: Gene References Into Functions

      Variation

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      Alleles

      Alleles of this type are documented at Mouse Genome Informatics  (MGI)
      • Endonuclease-mediated (1) 

      Interactions

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      Products Interactant Other Gene Complex Source Pubs Description

      General gene information

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      Markers

      Homology

      Gene Ontology Provided by MGI

      Function Evidence Code Pubs
      enables molecular_function ND
      No biological Data available
      more info
      		  
      Process Evidence Code Pubs
      involved_in biological_process ND
      No biological Data available
      more info
      		  
      Component Evidence Code Pubs
      is_active_in cellular_component ND
      No biological Data available
      more info
      		  

      General protein information

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      Preferred Names
      transcription factor BTF3 homolog 4

      NCBI Reference Sequences (RefSeq)

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      NEW Try the new Transcript table

      RefSeqs maintained independently of Annotated Genomes

      These reference sequences exist independently of genome builds. Explain

      These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

      mRNA and Protein(s)

      1. NM_001356361.2 → NP_001343290.1  transcription factor BTF3 homolog 4 isoform 1

        Status: VALIDATED

        Description
        Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
        Source sequence(s)
        AL607070
        Consensus CDS
        CCDS18456.1
        UniProtKB/Swiss-Prot
        Q9CQH7
        UniProtKB/TrEMBL
        A2A7Z4, Q78IG7
        Conserved Domains (1) summary
        cd22055
        Location:4 → 120
        NAC_BTF3; basal transcription factor BTF3

      2. NM_001404469.1 → NP_001391398.1  transcription factor BTF3 homolog 4 isoform 1

        Status: VALIDATED

        Source sequence(s)
        AL607070
        UniProtKB/Swiss-Prot
        Q9CQH7
        UniProtKB/TrEMBL
        A2A7Z4

      3. NM_001404470.1 → NP_001391399.1  transcription factor BTF3 homolog 4 isoform 1

        Status: VALIDATED

        Source sequence(s)
        AL607070
        UniProtKB/Swiss-Prot
        Q9CQH7
        UniProtKB/TrEMBL
        A2A7Z4
        Related
        ENSMUSP00000099802.2, ENSMUST00000102741.8

      4. NM_001404471.1 → NP_001391400.1  transcription factor BTF3 homolog 4 isoform 1

        Status: VALIDATED

        Source sequence(s)
        AL607070
        UniProtKB/Swiss-Prot
        Q9CQH7
        UniProtKB/TrEMBL
        A2A7Z4

      5. NM_001404472.1 → NP_001391401.1  transcription factor BTF3 homolog 4 isoform 1

        Status: VALIDATED

        Source sequence(s)
        AL607070
        UniProtKB/Swiss-Prot
        Q9CQH7
        UniProtKB/TrEMBL
        A2A7Z4
        Related
        ENSMUSP00000099801.2, ENSMUST00000102740.8

      6. NM_001404473.1 → NP_001391402.1  transcription factor BTF3 homolog 4 isoform 1

        Status: VALIDATED

        Source sequence(s)
        AL607070
        UniProtKB/Swiss-Prot
        Q9CQH7
        UniProtKB/TrEMBL
        A2A7Z4
        Related
        ENSMUSP00000099800.2, ENSMUST00000102739.2

      7. NM_001404474.1 → NP_001391403.1  transcription factor BTF3 homolog 4 isoform 2

        Status: VALIDATED

        Source sequence(s)
        AL607070

      8. NM_001404475.1 → NP_001391404.1  transcription factor BTF3 homolog 4 isoform 3

        Status: VALIDATED

        Source sequence(s)
        AL607070

      9. NM_001404476.1 → NP_001391405.1  transcription factor BTF3 homolog 4 isoform 2

        Status: VALIDATED

        Source sequence(s)
        AL607070

      10. NM_001404477.1 → NP_001391406.1  transcription factor BTF3 homolog 4 isoform 4

        Status: VALIDATED

        Source sequence(s)
        AL607070

      11. NM_001404478.1 → NP_001391407.1  transcription factor BTF3 homolog 4 isoform 7

        Status: VALIDATED

        Source sequence(s)
        AL607070

      12. NM_001404479.1 → NP_001391408.1  transcription factor BTF3 homolog 4 isoform 7

        Status: VALIDATED

        Source sequence(s)
        AL607070

      13. NM_001404480.1 → NP_001391409.1  transcription factor BTF3 homolog 4 isoform 5

        Status: VALIDATED

        Source sequence(s)
        AL607070

      14. NM_001404481.1 → NP_001391410.1  transcription factor BTF3 homolog 4 isoform 6

        Status: VALIDATED

        Source sequence(s)
        AL607070

      15. NM_001404482.1 → NP_001391411.1  transcription factor BTF3 homolog 4 isoform 8

        Status: VALIDATED

        Source sequence(s)
        AL607070

      16. NM_001404483.1 → NP_001391412.1  transcription factor BTF3 homolog 4 isoform 9

        Status: VALIDATED

        Source sequence(s)
        AL607070

      17. NM_001404484.1 → NP_001391413.1  transcription factor BTF3 homolog 4 isoform 9

        Status: VALIDATED

        Source sequence(s)
        AL607070

      18. NM_001404486.1 → NP_001391415.1  transcription factor BTF3 homolog 4 isoform 9

        Status: VALIDATED

        Source sequence(s)
        AL607070

      19. NM_001404487.1 → NP_001391416.1  transcription factor BTF3 homolog 4 isoform 9

        Status: VALIDATED

        Source sequence(s)
        AL607070

      20. NM_001404488.1 → NP_001391417.1  transcription factor BTF3 homolog 4 isoform 9

        Status: VALIDATED

        Source sequence(s)
        AL607070

      21. NM_001404489.1 → NP_001391418.1  transcription factor BTF3 homolog 4 isoform 9

        Status: VALIDATED

        Source sequence(s)
        AL607070

      22. NM_027453.4 → NP_081729.1  transcription factor BTF3 homolog 4 isoform 1

        See identical proteins and their annotated locations for NP_081729.1

        Status: VALIDATED

        Description
        Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
        Source sequence(s)
        AL607070
        Consensus CDS
        CCDS18456.1
        UniProtKB/Swiss-Prot
        Q9CQH7
        UniProtKB/TrEMBL
        A2A7Z4, Q78IG7
        Related
        ENSMUSP00000099803.5, ENSMUST00000102742.11
        Conserved Domains (1) summary
        cd22055
        Location:4 → 120
        NAC_BTF3; basal transcription factor BTF3

      RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

      The following sections contain reference sequences that belong to a specific genome build. Explain

      Reference GRCm39 C57BL/6J

      Genomic

      1. NC_000070.7 Reference GRCm39 C57BL/6J

        Range
        108671489..108691445 complement
        Download
        GenBank, FASTA, Sequence Viewer (Graphics)
      Nucleotide Protein Strain
      Heading Accession and Version
      Protein Accession Links
      GenPept Link UniProtKB Link
      Q9CQH7.1 GenPept UniProtKB/Swiss-Prot:Q9CQH7

      Gene LinkOut

      The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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