Conserved Protein Domain Family
NAC_BTF3

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cd22055: NAC_BTF3 
basal transcription factor BTF3
Basal transcription factor 3 (BTF3) plays an important role in the transcriptional regulation linked to growth and development in eukaryotes. In mammals, the BTF3 gene encodes two alternative splicing isoforms, BTF3a and BTF3b. The full length BTF3a protein excites transcription. The shortened BTF3b, which lacks the first 44 amino-terminal extension, is a component of the nascent polypeptide-associated complex (NAC), involved in regulating protein localization during translation. BTF3 is involved in oncogenesis; overexpression of BTF3 has been shown to be associated with a variety of malignancies such as cancer of the colon, pancreas, stomach, prostate and breast. It is upregulated in hypopharyngeal squamous cell carcinoma (HSCC) tumors correlating with lymph node metastasis and tumor promotion, thus indicating that BTF3 is a potential therapeutic target and prognostic biomarker for HSCC. BTF3 has also been implicated in the pathogenesis of osteosarcoma (OS), a malignant cancer that affects rapidly proliferating bones, and has a poor prognosis.
Statistics
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PSSM-Id: 409234
Aligned: 69 rows
Threshold Bit Score: 98.7773
Created: 22-Jun-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
heterodimerribosome
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Comment:based on the structure of Homo sapiens NAC alpha and beta (BTF3b) subunits that form a heterodimer, defined at 4A contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                             ###########    # #         
P20290        53 EKLAKLq--AQVRIGGKgtaRRK--KKVVHRta-taDDKKLQFSLKKLGVNNISGIEEVNMFTNQgTVIHFNNPKVQASl 127 human
XP_004828640  20 EKLRARlgvSGTQTGGKgtaRRK--VKKTSKai--gDDKRLQFTLRSIGAANIPGIEEVQMLKEDgHIISFSNPKVQTAp 95  Theileria equi ...
TRY50904      40 QKLRDRfgvGTTQVGGKgtaRRK--KRAQKPtg--vDVKKLQAVTSRFRCQTFPAIGEVTMMKKDgTCLHFSNPKLQASv 115 Cryptosporidium...
KII72704       4 AKLKLKq--ECVRIGGKgtpRRK--KKIVMKss-tnDDKKLQGSFKKLQLTNLTQADEIQVIKSDgTALIFKNPQASASy 78  Thelohanellus k...
XP_004353050   4 QKLAQLq--QGVRIGGKgtpRRK--HKAPRKknattDDKKLQSQLQKLGCQPMQGIEEVNLYKDDgTVIHFNNPKFHVGs 79  Acanthamoeba ca...
OAO14445      13 DKLKAKf-gTGARAGKGv-gRRS--KKVVHQta-nmEDAKLKQTFHKLGCQPIDMISEVNFFPKAeDIYHFTKCQVWISp 87  Blastocystis sp...
Q02642         9 AKLQKLs--ANNKVGGT---RRKlnKKAGSSagankDDTKLQSQLAKLHAVTIDNVAEANFFKDDgKVMHFNKVGVQVAa 83  Saccharomyces c...
RKP03893       4 EKLAQLq--AAARTGGKgtpRRKivKKPTSTa---aDDHKLVGVVQKHKVQTIPHVVEANLFRDDqHVVHFKAPKVQLSv 78  Caulochytrium p...
A6ZYK4         9 AKLHKLs--AANKVGGT---RRKinKKGNLYnnndkDNTKLQAELHKLHPMTIENVAEANFFKKNgKVLHFNSAVVQIAp 83  Saccharomyces c...
A5DF06         6 EKLAKLqqgAAKKVGGQ---RVKa-KKVKSEq----DDTKLMEALGKLKATKVNAVEEANFFKEDgKVLHFKRVGVQSAa 77  Meyerozyma guil...
Feature 1          ####### #                                              ###                    
P20290       128 aaNTFTITGHAETKQl-----------tEMLPSIl----------------------NQLGADsl--------------- 159 human
XP_004828640  96 naNTYVVTGVGEERE-------------ITLPEIl----------------------QQLSAAgidiskaaa---dstpa 137 Theileria equi ...
TRY50904     116 atNTYILTGNPQEKLi-----------kDLPQQInpmdlsaflndpkfqklleesqaNKLKMAsge-------------- 170 Cryptosporidium...
KII72704      79 tsSLFTFNGRPETKSvkdivfdlqkslpEQLEKI-----------------------KQHMAAtgid------------- 122 Thelohanellus k...
XP_004353050  80 gaTMYVVSGRAENKTi-----------qDIIPSLlq--------------------nSALGQAaaaaaaa--------kk 120 Acanthamoeba ca...
OAO14445      88 mnNTTAVFGAPERGPl-----------nSYGPGIf----------------------NQLGLAsllgalqqakneeakkp 134 Blastocystis sp...
Q02642        84 qhNTSVFYGLPQEKNl-----------qDLFPGIi----------------------SQLGPEai--------------- 115 Saccharomyces c...
RKP03893      79 kdHVVMLQGRSATKQi-----------tECFPEIl----------------------PQLGPEnm--------------- 110 Caulochytrium p...
A6ZYK4        84 qcNLTMIHGQPKENTl-----------nGLYPSVa----------------------SQLGSQeleyl-----------t 119 Saccharomyces c...
A5DF06        78 qhNVCAFTGYPQEKDv-----------tQLIPQIl----------------------PQLGAEnl--------------- 109 Meyerozyma guil...
Feature 1                     
P20290       160 ---tSLRRLAEAL 169 human
XP_004828640 138 ddtaDIPKLVEVF 150 Theileria equi strain WA
TRY50904     171 --ddDIPDLVENF 181 Cryptosporidium tyzzeri
KII72704     123 daskSIPEDFEAI 135 Thelohanellus kitauei
XP_004353050 121 ggddDVPELVESF 133 Acanthamoeba castellanii str. Neff
OAO14445     135 aeddDVPDLVENF 147 Blastocystis sp. ATCC 50177/Nand II
Q02642       116 ---qALSQLAAQM 125 Saccharomyces cerevisiae S288C
RKP03893     111 ---dVIRQIAAMY 120 Caulochytrium protostelioides
A6ZYK4       120 glahNLENEQTVL 132 Saccharomyces cerevisiae YJM789
A5DF06       110 ---eILRQLAEQI 119 Meyerozyma guilliermondii ATCC 6260

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