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RPL6P25 ribosomal protein L6 pseudogene 25 [ Homo sapiens (human) ]

Gene ID: 401725, updated on 10-Oct-2023

Summary

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Official Symbol
RPL6P25provided by HGNC
Official Full Name
ribosomal protein L6 pseudogene 25provided by HGNC
Primary source
HGNC:HGNC:36840
See related
Ensembl:ENSG00000213270 AllianceGenome:HGNC:36840
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL6_15_1263
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Genomic context

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Location:
12q21.31
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (83151311..83152220)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (83130981..83131889)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (83545090..83545999)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984487 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:83043817-83045016 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4686 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6691 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6692 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4687 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4688 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4689 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:83150061-83150605 Neighboring gene transmembrane O-mannosyltransferase targeting cadherins 2 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:83251535-83252512 Neighboring gene NANOG hESC enhancer GRCh37_chr12:83397660-83398161 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:83467822-83469021 Neighboring gene RNA, U6 small nuclear 977, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:83591168-83591841 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:83604635-83605269 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:83694145-83694645 Neighboring gene NANOG hESC enhancer GRCh37_chr12:83726841-83727342 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:83826060-83826560 Neighboring gene uncharacterized LOC105369874 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:83977974-83978474 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:84189628-84190827 Neighboring gene Sharpr-MPRA regulatory region 9787 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:84264433-84264934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:84264935-84265434 Neighboring gene uncharacterized LOC107984536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:84405381-84405881 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:84436768-84436958 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:84521790-84522315 Neighboring gene uncharacterized LOC124900326

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. Comuzzie AG, et al. PLoS One, 2012. PMID 23251661, Free PMC Article
  2. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010323.2 

    Range
    101..1010
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    83151311..83152220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    83130981..83131889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases