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Report for CCDS20374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20374.1 Public Mus musculus 6 Rbsn 23 108 98 CCDS HistoryNCBI Gene:78287Re-query CCDS DB by CCDS ID:20374.1Re-query CCDS DB by GeneID:78287See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20374.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014694.10 ENSMUSP00000014694.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014694.10Link to Ensembl Protein Viewer:ENSMUSP00000014694.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000014694Re-query CCDS DB by Protein ID:ENSMUSP00000014694
Original member Current member NCBI NM_030081.3 NP_084357.2 Accepted alive Link to Nucleotide Sequence:NM_030081.3Link to Protein Sequence:NP_084357.2Re-query CCDS DB by Nucleotide ID:NM_030081Re-query CCDS DB by Protein ID:NP_084357Link to BLAST:NP_084357.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084357.2 783 Q80Y56 783 100% 0 0

Chromosomal Locations for CCDS 20374.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 92189310 92190458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92191249 92191353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92193129 92193231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92193944 92194030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92198184 92198254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92199694 92199935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92201472 92201633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92201732 92201777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92202570 92202670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92207045 92207185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 92211588 92211732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2352 nt):
ATGGCATCTCTTGATGACCCAGGGGAGGTGAGGGAAGGCTTCCTGTGCCCTTTGTGCCTGAAGGACCTTC
AG
TCTTTCTATCAACTTCAGTCACATTATGAGGAAGAACACTTGGAAGATCGTGATGTCAAAGGGCAAAT
T
AAAAATCTTGTTCAGAAGGCTAGGAAAGCAAAGAACAAGTTGTTGAAACGAGAAGGAGATGATCGAGTG
GAA
CCAGGGACCCAAGGATATGAATCATTCAGTTATGGTGGGGTTGATCCTTACATGTGGGAACCCCAAG
AG
CTTGGTGCTATGAGAAGCCATCTTTCTGACTTCAAAAAACATCGTGCTGCAAGAATTGACCACTATGT
T
GTTGAAGTCAATAAATTAATCATCAGGTTGGAAAAGCTTACTGCATTTGACAGAACAAATACTGAGACT
TCA
AAGATTAGAGCAATAGAAAAGTCCGTGGTGCCTTGGGTCAATGACCAGGATGTCCCCTTCTGTCCAG
AC
TGTGGGAATAAATTCAGCATCCGGAACCGCCGTCACCACTGCCGCCTCTGTGGGTCTATCATGTGCAA
G
AAGTGTATGGAGCTCATCGGCCTGCCCTTAGCACATAAGCTCACCAGTGCCAGCAAGGACTCTCTGAGC
ACC
CACACCAGCCCCAGCCAGTCTCCTAACAGTGTCCATGGCTCCCGCCGGGGCAGCATCAGCAGCATGA
GC
AGTGTCAGCTCAGTCCTAGACGAGAAGGATGATGACCGCATCCGCTGCTGCACACACTGCAAGGACAA
G
CTGCTCAAGCGAGAGCAGCAGATGGACGAGAAGGAGCACACGCCTGACATCGTGAAGCTCTACGAGAAA
CTT
CGGCTTTGCATGGAGAAAGTTGACCAGAAAGCTCCCGAATACATCAGGATGGCAGCATCTTTAAATG
CT
GGGGAGACGACCTACAATCTGGAGCATGCCAATGACCTTCGAGTGGAAGTGCAGAAAGTATATGAGCT
A
ATAGACGCTTTAAGTAAGAAGATCTTAACCTTGGGCTTGAACCAAGACCCTTCACCACATCCAAACACT
TTG
CGGCTACAGAGAATGATCAGATACTCAGCTACATTATTTGTGCAGGAAAAGTTACTGGGTTTGATGT
CA
CTGCCAACCAAAGAACAGTTTGAAGAACTGAAAAAGAAAAGGAAGCAGGACCTGGAGCAGAAGAGGAC
C
GTGGAGAGACAGGCTGCTCTGGAGTCACGGCGGAAGCTTGAGGAAAGGCAGAGTGGTTTGGCATCTCAT
ACA
GCCAATGGGGACGTGAGGTCTCTTCGAGGCATCCCTCCCCCCTTGCGAAAGGCTGAGGGCTGGCTCC
CA
CTGTCAGAAGGTCAGGGACAGAGTGAAGATCCTGACCCTCTCCTCCAGCAGATCTATAACATTACATC
G
TTCATCAGGCAGGCCAAGGCTGCAGGCCGCACAGATGAGGTGCGCACACTTCAGGAGAACCTGCGGCAG
CTG
CAGGATGAGTATGACCAGCAGCAGACTGAGAAGGCCATTGAGCTGTCCCGGAAGCAGGCCGAGGAGG
AG
GAGCTGCAGCGGGAGCAGCTACAGATGCTCCGCAAGCGAGAGCTTGAACGAGAACAGGAGCAGTTCCT
G
GCAGCATCCCTGCAAACACGGACTCGTGTTCTAGAACTCCGAGAAGTTATACCCTTCCAATTGGAGGCC
AGT
CGAGGGCCTCACATTGATCTCTCCTATTCCTTGGATCAGGACTCCTCCCCAGTTCAGAGCAGCACAG
CT
CCTGATATCCTTACACCTGGCTCAGCTCTAGCACCCATGCACTTGTGGTCTGGGCCCCCAGCCCTTGG
C
CAGGAAACACTCCCTCAGAGCACCATGTCACAGCAAAGTGATAAGGCCTCACTCAACCCGTTTGATGAA
GAC
GACCTCTCCAGCCCTACAGAGGGTGCTATCAGCCCTGCTGCTGTAGAGGCTTTCCTGGGCCCTCCAG
CT
GCTGTCACCAAAGAATACAATCCTTTTGAGGAAGATGCTGAGGAAGAGGAGGTGGCAGAGTTGGGGGC
A
GGAAATCCCTTCACCGACCCAGACAGTCCAGCACCCAACCCTTTTGATGAGGATGACGGTCCCAGGCCT
GCC
AGTCCAGCCGCCCCTGGAAACCCTTTTGAAGAGTGCCCCTCCACCAACCCCTTCGAGGTGGACAGTG
AT
AGTGGCATGGAGGCCGAGGAACACATCGAGGAGGAGCTGCTCCTGCAGCAAATTGACAACATCAAGGC
T
TACATCTTTGATGCCAAGCAGTGTGGGCGAATGGACGAGGTTGAGGTTCTAACGGAGAACCTCCGGGAG
CTG
AAGTGCACCCTGGCTAAGCAGAAGGGGGCCCCTAATTGA


Translation (783 aa):
MASLDDPGEVREGFLCPLCLKDLQSFYQLQSHYEEEHLEDRDVKGQIKNLVQKARKAKNKLLKREGDDRV
E
PGTQGYESFSYGGVDPYMWEPQEL
GAMRSHLSDFKKHRAARIDHYVVEVNKLIIRLEKLTAFDRTNTET
S
KIR
AIEKSVVPWVNDQDVPFCPDCGNKFSIRNRRHHCRLCGSIMCKKCMELIGLPLAHKLTSASKDSLS
T
HTSPSQSPNSVHGSRRGSISSMSSVSSVLDEKDDDRIRCCTHCKDKLLKREQQMDEKEHTPDIVKLYE
K
L
RLCMEKVDQKAPEYIRMAASL
NAGETTYNLEHANDLRVEVQKVYELIDALSKKILTLGLNQDPSPHPNT
L
RLQRMIRYSATLFVQ
EKLLGLMSLPTKEQFEELKKKRKQDLEQKRTVERQAALESRRKLEERQSGLASH
T
ANGDVRSLRGIPPPLRKAEGWLPLSEGQGQSEDPDPLLQQIYNITSFIRQAKAAGRTDEVRTLQENLRQ
L
QDEYDQQQTEKAIELSRKQAEEEELQREQLQMLRKRELEREQEQFLAASLQTRTRVLELREVIPFQLEA
S
RGPHIDLSYSLDQDSSPVQSSTAPDILTPGSALAPMHLWSGPPALGQETLPQSTMSQQSDKASLNPFDE
D
DLSSPTEGAISPAAVEAFLGPPAAVTKEYNPFEEDAEEEEVAELGAGNPFTDPDSPAPNPFDEDDGPRP
A
SPAAPGNPFEECPSTNPFEVDSDSGMEAEEHIEEELLLQQIDNIKAYIFDAKQCGRMDEVEVLTENLRE
L
KCTLAKQKGAPN




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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